| Name
| Project
| Email
| WGs
|
| Geoffrey Abbott, Ph.D. | Predictive MSM of Atrial Fibrillation for Therapy Development | GWA2001@MED.CORNELL.EDU
|
| Gary An, M.D. | EMT/BSSE: Hierarchical Representation and Simulation of Modular Cellular Systems | [1]
|
| Kurt Anderson, Ph.D. | Framework for the Adaptive Multiscale Modeling of Biopolymers | anderk5@rpi.edu
|
| Russ Altman, M.D., Ph.D. | Physics-Based Simulation of Biological Structures | russ.altman@stanford.edu
|
| Victor Barocas, Ph.D. | Multiscale Mechanics of Bioengineered Tissues | baroc001@umn.edu
|
| James (Jim) Bassingthwaighte, M.D., Ph.D. | Software Integration between JSim and Systems Biology Workbench; Modeling for Heart, Lung, and Blood: From Cell to Organ; Adaptive Multi-Scale Model Simulation, Reduction and Integration for Cardiac Muscle Physiology | jbb2@u.washington.edu
|
| Daniel Beard, Ph.D. | Multi-Scale Modeling of the Heart in Metabolic Syndrome and Cardiovascular Disease, Mechanisms of Metabolic Dysfunction in Heart Disease | dbeard@mcw.edu
|
| Scott Berceli, M.D., Ph.D. | Multiscale Network Modeling of Hemodynamically-Driven Vascular Adaptation | bercesa@surgery.ufl.edu
|
| Theodore Berger | Predictive modeling of bioelectric activity on mammalian multilayered neuronal structures in the presence of supraphysiological electric fields | berger@bmsr.usc.edu
|
| Jeff Bischoff, Ph.D. | Research Interests: Multiscale Joint Biomechanics | jeff.bischoff@zimmer.com
|
| Danny Bluestein, Ph.D. | Optimizing Cardiovascular Device Thromboresistance for Eliminating Anticoagulants | dbluestein@ms.cc.sunysb.edu
|
| Georgiy Bobashev | Researching Social Dynamics of Local Methamphetamine Market | bobashev@rti.org
|
| James Bower, Ph.D. | GENESIS | BOWER@uthscsa.edu
|
| James Brasseur, Ph.D. | Micro-scale Transport as a Critical Link between Molecular-Scale Absorption and Macro-Scale Mixing in Gut Physiology and Function | brasseur@engr.psu.edu
|
| Markus Buehler, Ph.D. | Models to predict protein biomaterial performance | mbuehler@MIT.EDU
|
| David Cai | Collaborative Research: Cortical Processing across Multiple Time- and Space-Scales http://www.cims.nyu.edu/~yisun/publication.html http://www.rpi.edu/~kovacg/ http://www.math.nyu.edu/~cai/Publications/index.html | cai@cims.nyu.edu
|
| William Cannon, Ph.D. | Hierarchical, Multi-Objective Optimization of Microbial Community Proteomic Systems | william.cannon@pnl.gov
|
| Xiaolin Cheng, Ph.D. | Multiscale Mathematics and Simulations of Complex Biological Systems | chengx@ornl.gov
|
| Howard Chizeck, Sc.D. | Adaptive Multi-Scale Model Simulation, Reduction and Integration for Cardiac Muscle Physiology http://nsr.bioeng.washington.edu | chizeck@u.washington.edu
|
| Yoonsuck Choe, Ph.D. | Multi-Scale Imaging, Analysis, and Integration of Brain Networks | choe@tamu.edu
|
| Sharon Crook, Ph.D. | NeuroML Standards and Tools for Multiscale Model Specification and Exchange | Sharon.Crook@asu.edu
|
| David Christini, Ph.D. | Predictive MSM of Atrial Fibrillation for Therapy Development | dchristi@med.cornell.edu
|
| Ming Dao, Ph.D. | Multiscale Modeling and Parallel Simulations of Blood Flow in Cerebral Malaria and Sickle Cell Diseases | mingdao@mit.edu
|
| David D'Argenio, Ph.D. | Biomedical Simulations Resource: Core Project #1 - Pharmacokinetic/Pharmacodynamic Systems Analysis | dargenio@bmsr.usc.edu
|
| Suvranu De, Sc.D. | A Self-Consistent Multiscale Method for Modeling the Effects of Neutron Irradiation on the Mechanical Properties of BCC and FCC Metals; Nonlinear Multiscale Modeling of 3D Woven Fiber Composites Under Ballistic Loading; Development of a Self-Consistent Multiscale Method for Coupled Nonlinear Micro Macro Analysis of Heterogeneous Explosives; http://acor.rpi.edu/, http://www.springer.com/engineering/biomedical+eng/book/978-90-481-3574-5 | des@rpi.edu
|
| Thomas Deisboeck, M.D. | Center for the Development of a Virtual Tumor, CViT https://www.cvit.org | deisboec@helix.mgh.harvard.edu
|
| Scott Delp, Ph.D. | Physics-Based Simulation of Biological Structures | delp@stanford.edu
|
| Thomas Diacovo, M.D. | Model of Platelet Adhesion and Thrombus Formation | td2142@columbia.edu
|
| David Eckmann, M.D., Ph.D. | Targeted Microcarrier Design and Optimization | David.Eckmann@uphs.upenn.edu
|
| Daniel Einstein | 3D Imaging & Computer Model of the Respiratory Tract | daniel.einstein@pnl.gov
|
| Mounya Elhilali | Overcoming the Cocktail Party Problem: a Multi-Scale Perspective on the Neurobiology of Auditory Scene Analysis | mounya@jhu.edu
|
| Ahmet Erdemir, Ph.D. | Efficient Methods for Multi-Domain Biomechanical Simulations, Predicting Cell Deformation from Body Level Mechanical Loads, Open Knee: A Three-Dimensional Finite Element Representation of the Knee Joint
| erdemira@ccf.org | Biomechanics Working Group, Model and Data Sharing Working Group
|
| Stephen Eubank, Ph.D. | Modeling Immunity to Enteric Pathogens (MIEP) | seubank@vbi.vt.edu
|
| Ronan Fleming, Ph.D. | Numerical Optimization Algorithms and Software for Systems Biology | ronan.mt.fleming@gmail.com
|
| Joanne Flynn, Ph.D. | A multi-scale model to predict outcomes of immuno- modulation and drug therapy during TB | joanne@pitt.edu
|
| Marc Garbey | Multiscale Network Modeling of Hemodynamically-Driven Vascular Adaptation | garbey@cs.uh.edu
|
| James Glazier | CompuCell3D | glazier@indiana.edu
|
| Mark Gordon, Ph.D. | Multiscale Mathematics and Simulations of Complex Biological Systems | gordon@ameslab.gov mark@si.msg.chem.iastate.edu
|
| Trent Guess, Ph.D. | Dynamic Simulation of Joints Using Multi-Scale Modeling | guesstr@umkc.edu
|
| Randy Heiland, M.S. | CompuCell3D | heiland@indiana.edu
|
| Anthony Hunt, Ph.D. | Media:Research_Description_for_MSM04May10.pdf http://biosystems.ucsf.edu/index.htm | a.hunt@ucsf.edu
|
| Jay Humphrey, Ph.D. | Evolving Mechanics of Intraluminal Thrombus: From Formation to Organization | jay.humphrey@yale.edu
|
| Peter Hunter, Ph.D. | International Union of Physiological Sciences Council Member | p.hunter@auckland.ac.nz
|
| Paul Jasper | Numerical Tools for Analyzing Cell Signaling Circuits in Normal and Tumor Cells | pjasper@numericatech.com
|
| Yufang Jin, Ph.D. | Mathematical Modeling of Matrix Metalloproteinase-9 Driven Left Ventricular Remodeling Post Myocardial Infarction | Yufang.Jin@utsa.edu
|
| Roger Kamm, Ph.D. | Multi-Scale Analysis of Cellular Force Transmission and Biochemical Activation | rdkamm@mit.edu
|
| David Kaplan, Ph.D. | Models to Predict Protein Biomaterial Performance | David.Kaplan@tufts.edu
|
| George Karniadakis, Ph.D. | A Stochastic Molecular Dynamics Method for Multiscale Modeling of Blood Platelet Phenomena | gk@cfm.brown.edu
|
| Roy Kerckhoffs | The Role of Transmural Gradients of Excitation-Contraction Coupling in the Ventricularly Paced Normal and Failing Heart | roy@eng.ucsd.edu
|
| Michael King | Model of Platelet Adhesion and Thrombus Formation | mike.king@cornell.edu
|
| Denise Kirschner, Ph.D. | A multi-scale model to predict outcomes of immuno- modulation and drug therapy during TB | kirschne@umich.edu | Multi-scale modeling Working Group
|
| Gregor Kovacic, Ph.D. | Collaborative Research: Cortical Processing across Multiple Time- and Space-Scales http://www.cims.nyu.edu/~yisun/publication.html http://www.rpi.edu/~kovacg/ | kovacg@rpi.edu
|
| Mark Kramer | Multiscale analysis and modeling of spatiotemporal dynamics in human epilepsy | mak@bu.edu
|
| Joy Ku, Ph.D. | Physics-Based Simulation of Biological Structures; https://simtk.org/xml/index.xml | joyku@stanford.edu | Model and Data Sharing Working Group
|
| Rob Kunz, Ph.D. | Multi-Scale Human Respiratory System Simulations to Study the Health Effects of Aging, Disease and Inhaled Substances | rfk102@only.arl.psu.edu
|
| Anthony (Tony) Ladd, Ph.D. | Multi-Scale Modeling of Chemical-to-Mechanical Energy Conversion in Actin-Based Motility | tladd@che.ufl.edu
|
| Nicola Lai, Ph.D. (in place of Marco Cabrera) | Time Course of Metabolic Adaptations During Loading and Unloading | nicola.lai@case.edu
|
| Gianluca Lazzi | Predictive modeling of bioelectric activity on mammalian multilayered neuronal structures in the presence of supraphysiological electric fields | lazzi@utah.edu
|
| Peter Laz | A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Current Issues in Joint Replacement | Peter.Laz@du.edu
|
| Jonathan Lederer | Calcium Entrained Arrhythmias | jlederer@umaryland.edu
|
| Ching-Long Lin, Ph.D. | Multiscale Simulation of Gas Flow Distribution in the Human Lung | ching-long-lin@uiowa.edu
|
| Jennifer Linderman, Ph.D. | A multi-scale model to predict outcomes of immuno- modulation and drug therapy during TB | linderma@umich.edu
|
| Yaling Liu, Ph.D. | Modeling Particle Shape Effect in Nanomedicine | yal310@Lehigh.EDU
|
| Georg Luebeck, Ph.D. | Scales of Carcinogenesis: Cells, Crypts and Cancer; Controlling Esophageal Cancer in the US.: A Colloraborative Modeling Project | gluebeck@fhcrc.org
|
| Bill Lytton, M.D. | Extension of NEURON Simulator for Simulation of Reaction-Diffusion in Neurons ; NEURON Simulator | billl@neurosim.downstate.edu | Clinical & Translational; Computational Neuroscience
|
| Carlo Maley, Ph.D. | Scales of Carcinogenesis: Cells, Crypts and Cancer | cmaley@wistar.org
|
| Madhav Marathe, Ph.D. | Modeling Immunity to Enteric Pathogens (MIEP) | mmarathe@vbi.vt.edu
|
| Roger Mark, M.D., Ph.D. | Physionet | rgmark@mit.edu
|
| Vasilis Marmarelis, Ph.D. | Biomedical Simulations Resource (BMSR) | vzm@usc.edu | [Mathematical & Computational Methods]
|
| Andrew McCulloch, Ph.D. | Multi-Scale Modeling of the Mouse Heart: From Genotype to Phenotype http://cmrg.ucsd.edu, Multi-Scale Modeling of the Failing Heart for Cardiac Rysynchronization Therapy | amcculloch@ucsd.edu
|
| Jill McNitt-Gray, Ph.D. | http://www.asbweb.org/index.html ; http://dornsife.usc.edu/cf/faculty-and-staff/faculty.cfm?pid=1003520&CFID=1692145&CFTOKEN=13548813 | mcnitt@usc.edu
|
| Michael Meyer-Hermann, Ph.D. | Mathematical Modeling of the Migration in Germinal Centres | m.meyer-hermann@fias.uni-frankfurt.de
|
| George Moody | Physionet | george@MIT.edu
|
| James Moore, Ph.D. | Lymphatic Fluid Flow Modeling with Active Network Components | james.moore.jr@imperial.ac.uk | Biomechanics Working Group
|
| Mark Musen, M.D., Ph.D. | The National Center for Biomedical Ontology | musen@stanford.edu
|
| Sriram Neelamegham | Systems Biology of Glycosylation | neel@buffalo.edu
|
| Peter Ortoleva | Intercellular Genomics of Subsurface Microbial Colonies | ortoleva@indiana.edu
|
| Manish Parashar | http://nsfcac.rutgers.edu/people/parashar/ | parashar@rutgers.edu
|
| Abani Patra, Ph.D. | http://www.mae.buffalo.edu/people/full_time/a_patra.php | abani@buffalo.edu
|
| Bernhard Palsson | Numerical Optimization Algorithms and Software for Systems Biology | palsson@ucsd.edu
|
| Linda Petzold, Ph.D. | Stochastic Simulation Service: A Cloud Computing Framework for Modeling and Simulation | petzold@cs.ucsb.edu
|
| Sylvia Plevritis | http://rsl.stanford.edu/plevritis/ Comparative Modeling of Lung Cancer Control Policies | sylvia.plevritis.edu
|
| Aleksander Popel | Predictive Experiment-Based Multiscale Models of Angiogenesis in Breast Cancer | apopel@jhu.edu
|
| Peter Richardson | A Stochastic Molecular Dynamics Method for Multiscale Modeling of Blood Platelet Phenomena | Peter_Richardson@brown.edu
|
| Paul Rullkoetter | A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Current Issues in Joint Replacement | Paul.Rullkoetter@du.edu
|
| Ilya Rybak, Ph.D. | Multiscale Model of Neural Control of Breathing] | Rybak@drexel.edu
|
| Gerald Saidel, Ph.D. (in place of Marco Cabrera) | Time Course of Metabolic Adaptations During Loading and Unloading | gerald.saidel@case.edu
|
| Terence Sanger, M.D., Ph.D. | High Speed Simulation of Developmental Motor Disorders | tsanger@usc.edu
|
| Michael Saunders | Numerical Optimization Algorithms and Software for Systems Biology | saunders@stanford.edu
|
| Herbert Sauro, Ph.D. | Software Integration between JSim and Systems Biology Workbench, Modeling for Heart, Lung, and Blood: From Cell to Organ | hsauro@u.washington.edu
|
| Jay Schieber | CISE: Multiscale Modeling to Develop a Cyberinfrastructure for the Dynamics of Flexible and Stiff Entangled Macromolecules http://polyhub.org/bin/view | sjs49@engr.psu.edu
|
| Steven Schiff | CRCNS Collaborative Research: Model-Based Control of Spreading Depression | schieber@iit.edu
|
| Bill Schultz | http://www-personal.umich.edu/~schultz/ | schultz@umich.edu
|
| James Schwaber | http://www.dbi.tju.edu | james.schwaber@jefferson.edu
|
| Daniel Segre | An Open Source Platform for Multi-Scale Spatially Distributed Simulations of Microbial Ecosystems | dsegre@bu.edu
|
| Terrence (Terry) Sejnowski, Ph.D. | Integrated Empirical and Multiscale Modeling of Human Sleep Spindles | sejnowski@salk.edu
|
| Kevin Shelburne | A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Current Issues in Joint Replacement, http://www.du.edu/biomechanics | kevin.shelburne@comcast.net
|
| Yohannes Shiferaw | MSM of Calcium Mediated Triggered Activity in the Heart | yohannes.shiferaw@csun.edu
|
| Jeff Smith, Ph.D. | Multiscale Model of Neural Control of Breathing | jsmith@helix.nih.gov
|
| Jeremy Smith | Multiscale Mathematics and Simulations of Complex Biological Systems | smithjc@ornl.gov
|
| Subra Suresh, Sc.D. | Multiscale Modeling and Parallel Simulations of Blood Flow in Cerebral Malaria and Sickle Cell Diseases | ssuresh@mit.edu
|
| Maciej Swat, Ph.D. | Multiscale Studies of Segmentation in Vertebrate Embryos | mswat@indiana.edu
|
| Dalin Tang, Ph.D. | In Vivo IVUS Image-Based Modeling for Human Coronary Plaque Assessment | dtang@wpi.edu
|
| Michela Taufer, Ph.D. | DAPLDS: A Dynamically Adaptive Protein-Ligand Docking System Based on Multi-Scale Modeling | taufer@acm.org
|
| Merryn Tawhai, Ph.D. | Airway Hyperresponsiveness: From Molecule to Organ | m.tawhai@auckland.ac.nz
|
| Ines Thiele | Numerical Optimization Algorithms and Software for Systems Biology | ines.thiele@googlemail.com
|
| Natalia Trayanova | Resynchronizing the Failing Heart: Insights from a Multiscale Cardiac Model | ntrayanova@jhu.edu
|
| Raj Vadigepalli | "Modeling Central Autonomic Regulatory Network Adaptation to Hypertension” and “Integrated Modeling of Adaptive Neuronal Regulation” | Rajanikanth.Vadigepalli@jefferson.edu
|
| Paolo Vicini, Ph.D. | Research Interests: Pharmacokinetics, Pharmacodynamics, Biotherapeutics, Translational Research, Model Identification and Parameter Estimation | paolo.vicini@pfizer.com
|
| Yoram Vodovotz, Ph.D. | Mathematical Modeling of Inflammation in ARDS | vodovotzy@upmc.edu | Multiscale Systems Biology; Clinical and Translational Issues
|
| Jeff Weiss, Ph.D. | FEBio-Finite Elements for Biomechanics and Biophysics | jeff.weiss@utah.edu
|
| Ron White, Ph.D. | http://sdmines.sdsmt.edu/sdsmt/directory/personnel/rwhite | Ronald.White@sdsmt.edu
|
| Bridget Wilson, Ph.D. | Mapping and Modeling ErbB Receptor Membrane Topography | jywong@bu.edu
|
| Joyce Wong, Ph.D. | Models to predict protein biomaterial performance | bwilson@salud.unm.edu
|
| Xiaobo Zhou, Ph.D. | Modeling the Growth of the MIC Niche at the System Level | xizhou@wakehealth.edu
|
