COVID-19 AI Challenges

Investigators
Open Research Community
Contact info (email)
https://www.kaggle.com/allen-institute-for-ai/CORD-19-research-challenge
1. Define context(s)
identify/explore new therapies
other
Current Conformance Level / Target Conformance Level
Extensive
Primary goal of the model/tool/database

Kaggle is hosting the COVID-19 Open Research Dataset Challenge, a series of important questions designed to inspire the community to use CORD-19 to find new insights about the COVID-19 pandemic including the natural history, transmission, and diagnostics for the virus, management measures at the human-animal interface, lessons from previous epidemiological studies, and more.

Biological domain of the model
All
Structure(s) of interest in the model
All
Spatial scales included in the model
All
Time scales included in the model
All
2. Data for building and validating the model
Data for building the model Published? Private? How is credibility checked? Current Conformance Level / Target Conformance Level
in vitro (primary cells cell, lines, etc.) yes no peer reviewed literature Extensive
ex vivo (excised tissues) yes no peer reviewed literature Extensive
in vivo pre-clinical (lower-level organism or small animal) yes no peer reviewed literature Extensive
in vivo pre-clinical (large animal) yes no peer reviewed literature Extensive
Human subjects/clinical yes no peer reviewed literature Extensive
Other: ________________________
Data for validating the model Published? Private? How is credibility checked? Current Conformance Level / Target Conformance Level
in vitro (primary cells cell, lines, etc.) yes
ex vivo (excised tissues) yes
in vivo pre-clinical (lower-level organism or small animal) yes
in vivo pre-clinical (large animal) yes
Human subjects/clinical yes
Other: ________________________
3. Validate within context(s)
Who does it? When does it happen? How is it done? Current Conformance Level / Target Conformance Level
Verification community
Validation community
Uncertainty quantification community
Sensitivity analysis community
Other:__________
Additional Comments
4. Limitations
Disclaimer statement (explain key limitations) Who needs to know about this disclaimer? How is this disclaimer shared with that audience? Current Conformance Level / Target Conformance Level
heterogeneous problems to address all insufficient
sparse models all insufficient
sparse data all insufficient
5. Version control
Current Conformance Level / Target Conformance Level
insufficient
Naming Conventions? Repository? Code Review?
individual modeler yes
within the lab yes
collaborators yes
6. Documentation
Current Conformance Level / Target Conformance Level
Code commented? insufficient
Scope and intended use described? insufficient
User’s guide? insufficient
Developer’s guide? insufficient
7. Dissemination
Current Conformance Level / Target Conformance Level
partial
Target Audience(s): “Inner circle” Scientific community Public
Simulations yes
Models yes
Software yes
Results yes
Implications of results yes
8. Independent reviews
Current Conformance Level / Target Conformance Level
partial
Reviewer(s) name & affiliation: community challenges
When was review performed?
How was review performed and outcomes of the review?
9. Test competing implementations
Current Conformance Level / Target Conformance Level
insufficient
Yes or No (briefly summarize)
Were competing implementations tested?
Did this lead to model refinement or improvement?
10. Conform to standards
Current Conformance Level / Target Conformance Level
insufficient
Yes or No (briefly summarize)
Are there operating procedures, guidelines, or standards for this type of multiscale modeling?
How do your modeling efforts conform?