Tools

ADAPT

Big Data to Knowledge (BD2K) Resource

Biofilm consortium model: metabolite cross feeding and inhibition

BioPP

BSim

CompuCell3D

Continuity

DEDiscover

DREM

Elementary Flux Mode Analysis

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Platform

3DVC

Biocellion

CellX

COBRA toolbox

CompuCell3D

FLAME

JSim

MASON

MIST

OpenMM

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Databases

3D Virtual Cell Resource Catalog

BioCoDa - Biological Component Databank

BioModels Database

CellML

Community Health Data Initiative

Community Systems Biology Knowledgebase

Continuity

Materials Genome Initiative

ModelDB for Neural Simulations

NSR Physiome Model Repository

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