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Tools & databases
Tools
ADAPT
Big Data to Knowledge (BD2K) Resource
Biofilm consortium model: metabolite cross feeding and inhibition
BioPP
BSim
CompuCell3D
Continuity
DEDiscover
DREM
Elementary Flux Mode Analysis
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Platform
3DVC
Biocellion
CellX
COBRA toolbox
CompuCell3D
FLAME
JSim
MASON
MIST
OpenMM
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Databases
3D Virtual Cell Resource Catalog
BioCoDa - Biological Component Databank
BioModels Database
CellML
Community Health Data Initiative
Community Systems Biology Knowledgebase
Continuity
Materials Genome Initiative
ModelDB for Neural Simulations
NSR Physiome Model Repository
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