A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

abort(int) - Method in class JSim.nml.opt.GGopt

abort(int) - Method in class JSim.nml.opt.NL2sol

abort(int) - Method in class JSim.nml.opt.Simplex

abortNaN() - Method in class JSim.plan.Plan

AbortXcept - Exception in JSim.plan

AbortXcept(String) - Constructor for exception JSim.plan.AbortXcept

ABSENT - Static variable in class JSim.plan.VarUsage

accumVarMems(Hashtable<Var, SeqMem.CodePoint>) - Method in class JSim.plan.SeqMem

acosh(double) - Static method in class JSim.util.UtilMath

actions - Variable in class JSim.plan.TEvent

add(Plugin.List) - Method in class JSim.nml.opt.OptimFactory

add(Plugin) - Method in class JSim.nml.opt.OptimFactory

add(SeqItem) - Method in class JSim.plan.SeqBlock

add(SeqEdge) - Method in class JSim.plan.SeqPath

add(Var) - Method in class JSim.plan.VarMem

add(Var) - Method in class JSim.plan.VarUsages

add(Var, int) - Method in class JSim.plan.VarUsages

add(Var, int, Domain) - Method in class JSim.plan.VarUsages

add(VarUsage) - Method in class JSim.plan.VarUsages

add(VarUsages) - Method in class JSim.plan.VarUsages

add(DomainSet) - Method in class JSim.plan.VarUsages

add(Collection<Var>) - Method in class JSim.plan.VarUsages

add(Named) - Method in class JSim.util.NamedList

add(int, Named) - Method in class JSim.util.NamedList

add(String, int) - Method in class JSim.util.StringList

add(E) - Method in class JSim.util.UniqList

addAll(Collection<Var>) - Method in class JSim.plan.VarMem

addAll(ArrayList<E>) - Method in class JSim.util.UniqList

addAuxValue(String, double) - Method in class JSim.data.TacData

addColumn(int) - Method in class JSim.util.TextColumns

addColumn(int, String) - Method in class JSim.util.TextColumns

addColumns(int, int) - Method in class JSim.util.TextColumns

addCon(DECon) - Method in class JSim.plan.DETool

addConstUnit(Unit) - Method in class JSim.plan.TModel

addCurve(Data, int, int) - Method in class JSim.data.TacData

addData(Data.List) - Method in class JSim.data.PlotData

addDomains(Expr.List) - Method in class JSim.aserver.ASVar

ADDITIVE - Static variable in class JSim.data.NoiseMaker

addNamed(int, Named) - Method in class JSim.util.NamedList

addPath(String, String, int) - Method in class JSim.util.StringList

addPlugin(Plugin) - Method in class JSim.aserver.ASServer

addPoint(double) - Method in class JSim.data.IrregularGridData

addResult(double, double[]) - Method in class JSim.data.OptimResults

addRun() - Method in class JSim.data.TacData

addTool(Tool) - Method in class JSim.plan.MuCluster

addUniq(String) - Method in class JSim.util.StringList

addUniq(String[]) - Method in class JSim.util.StringList

addUnsafe(E) - Method in class JSim.util.UniqList

addVarMems() - Method in class JSim.plan.SeqMem

advanced - Variable in class JSim.data.ProfileData

alerts - Variable in class JSim.plan.Logger

alg(String) - Method in class JSim.data.OptimAlg.NList

alg(int) - Method in class JSim.data.OptimAlg.NList

alg - Variable in class JSim.data.OptimArgs

alg() - Method in class JSim.data.OptimArgs

algInfo() - Static method in class JSim.nml.opt.Genetic

algInfo() - Static method in class JSim.nml.opt.GGopt

algInfo() - Static method in class JSim.nml.opt.GridSearch

algInfo() - Static method in class JSim.nml.opt.NelderMead

algInfo() - Static method in class JSim.nml.opt.NL2sol

algInfo() - Method in class JSim.nml.opt.OptimFactory

algInfo() - Static method in class JSim.nml.opt.Praxis

algInfo() - Static method in class JSim.nml.opt.PSwarm

algInfo() - Static method in class JSim.nml.opt.Sensop

algInfo() - Static method in class JSim.nml.opt.SimAnneal

algInfo() - Static method in class JSim.nml.opt.Simplex

algs() - Method in class JSim.nml.opt.OptimFactory

ALL - Static variable in class JSim.data.OptimAlg

allNaN() - Method in class JSim.data.Data

allNaN() - Method in class JSim.data.Data.List

allNaN() - Method in class JSim.data.RegularGridData

allocNativeThreads(int) - Static method in class JSim.nml.opt.Optimizer

allowMissingDomainControls() - Method in class JSim.plan.Plan

allowMissingICs() - Method in class JSim.plan.Plan

allowMP() - Method in class JSim.nml.opt.Genetic

allowMP() - Method in class JSim.nml.opt.GGopt

allowMP() - Method in class JSim.nml.opt.GridSearch

allowMP() - Method in class JSim.nml.opt.NelderMead

allowMP() - Method in class JSim.nml.opt.NL2sol

allowMP() - Method in class JSim.nml.opt.Optimizer

allowMP() - Method in class JSim.nml.opt.Praxis

allowMP() - Method in class JSim.nml.opt.PSwarm

allowMP() - Method in class JSim.nml.opt.Sensop

allowMP() - Method in class JSim.nml.opt.SimAnneal

allowMP() - Method in class JSim.nml.opt.Simplex

allowOrphanICs() - Method in class JSim.plan.Plan

ANTIMONY - Static variable in class JSim.data.JSReadable

ANTIMONY - Static variable in class JSim.data.SourceBundler

AntimonyCheck - Class in JSim.data

AntimonyCheck(String) - Constructor for class JSim.data.AntimonyCheck

anyEdge() - Method in class JSim.plan.SeqGraph

anyEdgeFrom(SeqNode) - Method in class JSim.plan.SeqGraph

APPROX - Static variable in class JSim.plan.ImplicitBound

areSolvable() - Method in class JSim.plan.VarUsages

args - Variable in class JSim.aserver.ASInfo.Optim

args - Variable in class JSim.aserver.ASInfo.OptimInfo

args - Variable in class JSim.data.OptimResults

args - Variable in class JSim.data.OptimResults.Info

array() - Method in class JSim.util.StringList

arrayList() - Method in class JSim.plan.TExpr

ASInfo - Class in JSim.aserver

ASInfo() - Constructor for class JSim.aserver.ASInfo

ASInfo.Build - Class in JSim.aserver

ASInfo.BuildInfo - Class in JSim.aserver

ASInfo.JobInfo - Interface in JSim.aserver

ASInfo.Loops - Class in JSim.aserver

ASInfo.LoopsInfo - Class in JSim.aserver

ASInfo.Message - Class in JSim.aserver

ASInfo.Mopt - Class in JSim.aserver

ASInfo.MoptInfo - Class in JSim.aserver

ASInfo.Optim - Class in JSim.aserver

ASInfo.OptimInfo - Class in JSim.aserver

ASInfo.RunStatus - Class in JSim.aserver

ASInfo.Sandbox - Class in JSim.aserver

ASInfo.Sens - Class in JSim.aserver

ASInfo.SensInfo - Class in JSim.aserver

ASInfo.Status - Class in JSim.aserver

asinh(double) - Static method in class JSim.util.UtilMath

ASModel - Interface in JSim.aserver

ASModel.Flags - Class in JSim.aserver

ASQuery - Interface in JSim.aserver

ASServer - Class in JSim.aserver

ASServer() - Constructor for class JSim.aserver.ASServer

ASServer.Messenger - Interface in JSim.aserver

ASVar - Class in JSim.aserver

ASVar() - Constructor for class JSim.aserver.ASVar

asvar(int) - Method in class JSim.aserver.ASVar.List

asvar(int) - Method in class JSim.aserver.ASVar.NList

asvar(String) - Method in class JSim.aserver.ASVar.NList

ASVar.List - Class in JSim.aserver

ASVar.NList - Class in JSim.aserver

atanh(double) - Static method in class JSim.util.UtilMath

atString() - Method in class JSim.plan.DomainSet

AUX - Static variable in class JSim.data.TacData

B

base() - Method in class JSim.data.PlotData

baseVals - Variable in class JSim.aserver.ASInfo.Loops

baseVals - Variable in class JSim.aserver.ASInfo.LoopsInfo

baseVals - Variable in class JSim.aserver.ASInfo.Optim

baseVals - Variable in class JSim.aserver.ASInfo.OptimInfo

baseVals - Variable in class JSim.aserver.ASInfo.Sens

baseVals - Variable in class JSim.aserver.ASInfo.SensInfo

bc(TSubDom) - Method in class JSim.plan.DETool

BCBlock - Class in JSim.plan

BCBlock(PDEBlock, TSubDom) - Constructor for class JSim.plan.BCBlock

bcblock(Domain, boolean) - Method in class JSim.plan.PDEBlock

besselI0(double) - Static method in class JSim.util.UtilMath

besselI1(double) - Static method in class JSim.util.UtilMath

besselJn(double, double) - Static method in class JSim.util.UtilMath

besselKn(double, double) - Static method in class JSim.util.UtilMath

besselYn(double, double) - Static method in class JSim.util.UtilMath

bestCall - Variable in class JSim.data.OptimResults

bestCall - Variable in class JSim.data.OptimResults.Info

bestCompare - Variable in class JSim.data.OptimResults

bestCompare - Variable in class JSim.data.OptimResults.Info

bestErr - Variable in class JSim.data.OptimResults

bestErr - Variable in class JSim.data.OptimResults.Info

bestUpdate(DataCompare) - Method in class JSim.data.OptimResults

bestX - Variable in class JSim.data.OptimResults

bestX - Variable in class JSim.data.OptimResults.Info

Block(Data.List) - Constructor for class JSim.data.CSVDataWriter.Block

BLOCK - Static variable in class JSim.data.DataFilter

Block(Data.List) - Constructor for class JSim.data.PrettyDataWriter.Block

Block0(Data.List) - Constructor for class JSim.data.CSVDataWriter.Block0

Block0(Data.List) - Constructor for class JSim.data.PrettyDataWriter.Block0

Block1(Data.List) - Constructor for class JSim.data.CSVDataWriter.Block1

Block1(Data.List) - Constructor for class JSim.data.PrettyDataWriter.Block1

Block2(Data.List) - Constructor for class JSim.data.CSVDataWriter.Block2

Block2(Data.List) - Constructor for class JSim.data.PrettyDataWriter.Block2

Blocked(DataFormat) - Constructor for class JSim.data.DataWriter.Blocked

BlockN(Data.List) - Constructor for class JSim.data.CSVDataWriter.BlockN

BlockN(Data.List) - Constructor for class JSim.data.PrettyDataWriter.BlockN

boolVal() - Method in class JSim.data.NamedVal.Bool

boolVal() - Method in class JSim.data.NamedVal

boolVal(String, boolean) - Method in class JSim.data.NamedVal.NList

bound(double, double, double) - Static method in class JSim.util.Util

bound(double, double[]) - Static method in class JSim.util.Util

BOUND_FZERO - Static variable in class JSim.data.OptimAlg

bounds - Variable in class JSim.data.OptimArgs

boundsNeeded() - Method in class JSim.data.OptimAlg

boundsNeeded - Variable in class JSim.data.OptimAlg.Info

box - Variable in class JSim.plan.MainBlock

box() - Method in class JSim.plan.MuBlock

box() - Method in class JSim.plan.Plan

Build() - Constructor for class JSim.aserver.ASInfo.Build

build() - Method in class JSim.aserver.ASInfo.BuildInfo

BuildInfo(ASInfo.Build) - Constructor for class JSim.aserver.ASInfo.BuildInfo

buildLinear() - Method in class JSim.plan.ImplicitTool

buildRT(ASInfo.Build) - Method in interface JSim.aserver.ASModel

bump(String) - Static method in class JSim.util.Util

bump(File) - Static method in class JSim.util.UtilIO

C

calcCost(MuCluster) - Method in class JSim.plan.MuCost

calcCost(MuCluster, MuCluster) - Method in class JSim.plan.MuCost

calcCovMat - Variable in class JSim.data.OptimArgs

calcError(RTContext, double[], OptimResults) - Method in interface JSim.nml.opt.OptimCallbacks

calcErrors(RTContext, double[][], double[], OptimResults) - Method in interface JSim.nml.opt.OptimCallbacks

calcExtrema() - Method in class JSim.data.Data

calcExtrema() - Method in class JSim.data.GridData

calcExtrema() - Method in class JSim.data.PlotData

calcExtrema() - Method in class JSim.data.RealNData

calcSensMatrix(RTContext, double[], double[], double[], OptimResults) - Method in interface JSim.nml.opt.OptimCallbacks

callbacks() - Method in class JSim.gui.plugin.GGraphic

CANCEL - Static variable in class JSim.data.OptimResults

cancel() - Method in class JSim.util.MPDispatch

cancel() - Method in class JSim.util.MPDispatch.Worker

cancelJob() - Method in interface JSim.aserver.ASModel

capitalize(String) - Static method in class JSim.util.Util

cbcost() - Method in class JSim.plan.MuCluster

CELLML - Static variable in class JSim.data.SourceBundler

cexpr() - Method in class JSim.plan.TEqn

charno - Variable in class JSim.util.XceptPos

child - Variable in class JSim.util.XceptPos

classLoader() - Method in class JSim.data.Plugin

className() - Method in class JSim.data.Plugin

cleanMessage() - Method in exception JSim.util.Xcept

cleanMessage(Throwable) - Static method in exception JSim.util.Xcept

clear() - Method in class JSim.util.TextColumns

clone() - Method in class JSim.plan.SeqMem.LoopStack

close() - Method in class JSim.util.NullOutputStream

CodePoint(SeqItem, SeqItem) - Constructor for class JSim.plan.SeqMem.CodePoint

codeRef() - Method in class JSim.plan.TEqn

coefB() - Method in class JSim.plan.PDE1Factors

coefD() - Method in class JSim.plan.PDE1Factors

coefDx() - Method in class JSim.plan.PDE1Factors

coefF1(boolean) - Method in class JSim.plan.PDE1Factors

coefF2(boolean) - Method in class JSim.plan.PDE1Factors

coefF3(boolean) - Method in class JSim.plan.PDE1Factors

coefP() - Method in class JSim.plan.PDE1Factors

coefS() - Method in class JSim.plan.PDE1Factors

cogLearn - Variable in class JSim.data.OptimArgs

COLUMNDATA - Static variable in class JSim.data.JSReadable

ColumnDataFormat - Class in JSim.data

ColumnDataFormat() - Constructor for class JSim.data.ColumnDataFormat

ColumnDataReader - Class in JSim.data

ColumnDataReader(ColumnDataFormat, Reader) - Constructor for class JSim.data.ColumnDataReader

ColumnDataWriter - Class in JSim.data

ColumnDataWriter(ColumnDataFormat) - Constructor for class JSim.data.ColumnDataWriter

combine(GridData) - Method in class JSim.data.GridData

common(VarUsages) - Method in class JSim.plan.DECon

common_LHB - Static variable in class JSim.data.ProfileData

common_RHB - Static variable in class JSim.data.ProfileData

commonAncestor(SeqPhase) - Method in class JSim.plan.SeqPhase

compare(Domain, Domain) - Method in class JSim.plan.MainGraph

compare(VarGraphML.Edge) - Method in class JSim.plan.VarGraphML.Edge

compareSingleCurve() - Method in class JSim.data.DataCompare

compareTo(ImplicitPool.PoolEqn) - Method in class JSim.plan.ImplicitPool.PoolEqn

compareTo(SeqUntangler.PullParms) - Method in class JSim.plan.SeqUntangler.PullParms

compareTo(String) - Method in class JSim.util.NamedList.Item

COMPILE - Static variable in interface JSim.aserver.ASModel

condno - Variable in class JSim.data.OptimResults

condno - Variable in class JSim.data.OptimResults.Info

confLims - Variable in class JSim.data.OptimResults

confLims - Variable in class JSim.data.OptimResults.Info

confPcts - Variable in class JSim.data.OptimArgs

constRealVal() - Method in interface JSim.aserver.ASQuery

contains(SeqNode) - Method in class JSim.plan.SeqGraph

contains(SeqNode) - Method in class JSim.plan.SeqPath

contains(SeqPhase) - Method in class JSim.plan.SeqPhase

contains(VarUsage) - Method in class JSim.plan.VarUsages

containsAll(DomainSet) - Method in class JSim.plan.DomainSet

containSame(String) - Method in class JSim.util.StringList

containSame(StringList) - Method in class JSim.util.StringList

containSame(String, String[]) - Static method in class JSim.util.StringList

containsAny(DomainSet) - Method in class JSim.plan.DomainSet

containStart(String, String[]) - Static method in class JSim.util.StringList

copy() - Method in class JSim.aserver.ASInfo.Optim

copy() - Method in class JSim.data.Data

copy() - Method in class JSim.data.Data.List

copy() - Method in class JSim.data.DataCompare

cosh(double) - Static method in class JSim.util.UtilMath

cost() - Method in class JSim.plan.MuCluster

count(String, char) - Static method in class JSim.util.Util

counts - Variable in class JSim.aserver.ASInfo.Loops

counts - Variable in class JSim.aserver.ASInfo.LoopsInfo

covar(RealNData, RealNData) - Static method in class JSim.data.DataStats

covar(RealNData, double, double, RealNData, double, double) - Static method in class JSim.data.DataStats

covMat - Variable in class JSim.data.OptimResults

covMat - Variable in class JSim.data.OptimResults.Info

create(NamedVal.NList, ASServer.Messenger, ASInfo.Sandbox) - Static method in class JSim.aserver.ASServer

create(String, double) - Static method in class JSim.data.NamedVal

create(String, int) - Static method in class JSim.data.NamedVal

create(String, boolean) - Static method in class JSim.data.NamedVal

create(String, String) - Static method in class JSim.data.NamedVal

create(String, String[]) - Static method in class JSim.data.NamedVal

create(String, Data) - Static method in class JSim.data.NamedVal

create(TRelation, VarUsages) - Static method in class JSim.plan.ImplicitBound

create(DETool) - Static method in class JSim.plan.PDEFactors

createBlock(int) - Method in class JSim.plan.ImplicitPool

createDoc(String) - Static method in class JSim.util.UtilXML

createOptimizer(String) - Method in class JSim.nml.opt.OptimFactory

createReader(Reader) - Method in class JSim.data.ColumnDataFormat

createReader(Reader) - Method in class JSim.data.CSVDataFormat

createReader(Reader) - Method in class JSim.data.DataFormat

createReader(File) - Method in class JSim.data.DataFormat

createReader(String) - Method in class JSim.data.DataFormat

createReader(byte[]) - Method in class JSim.data.DataFormat

createReader(InputStream) - Method in class JSim.data.DataFormat

createReader(Reader) - Method in class JSim.data.I4BullDataFormat

createReader(Reader) - Method in class JSim.data.JSMLDataFormat

createReader(Reader) - Method in class JSim.data.TacDataFormat

createWriter() - Method in class JSim.data.ColumnDataFormat

createWriter() - Method in class JSim.data.CSVDataFormat

createWriter() - Method in class JSim.data.DataFormat

createWriter() - Method in class JSim.data.I4BullDataFormat

createWriter() - Method in class JSim.data.JSMLDataFormat

createWriter() - Method in class JSim.data.LineDataFormat

createWriter() - Method in class JSim.data.MatlabDataFormat

createWriter() - Method in class JSim.data.PrettyDataFormat

createWriter() - Method in class JSim.data.TacDataFormat

CROP - Static variable in class JSim.data.DataFilter

crosses(String) - Method in class JSim.plan.SeqPath

crossoverRate - Variable in class JSim.data.OptimArgs

crushWhitespace(String) - Static method in class JSim.util.Util

CSVDATA - Static variable in class JSim.data.JSReadable

CSVDataFormat - Class in JSim.data

CSVDataFormat() - Constructor for class JSim.data.CSVDataFormat

CSVDataReader - Class in JSim.data

CSVDataReader(CSVDataFormat, Reader) - Constructor for class JSim.data.CSVDataReader

CSVDataWriter - Class in JSim.data

CSVDataWriter(CSVDataFormat) - Constructor for class JSim.data.CSVDataWriter

CSVDataWriter.Block - Class in JSim.data

CSVDataWriter.Block0 - Class in JSim.data

CSVDataWriter.Block1 - Class in JSim.data

CSVDataWriter.Block2 - Class in JSim.data

CSVDataWriter.BlockN - Class in JSim.data

ct() - Method in class JSim.data.GridData

ct() - Method in class JSim.data.IrregularGridData

ct() - Method in class JSim.data.RegularGridData

ct - Variable in class JSim.data.RegularGridData.Info

ct - Variable in class JSim.util.UtilIO.DebugFileOutputStream

CURR - Static variable in class JSim.plan.TExpr

CURR - Static variable in class JSim.plan.Tool

CURR - Static variable in class JSim.plan.VarUsage

curve(String) - Method in class JSim.data.TacData

curveName - Variable in class JSim.data.DataCompare.IndividCrvResults

curveName(int, int, int) - Method in class JSim.data.TacData

curveWgts - Variable in class JSim.aserver.ASInfo.Optim

curveWgts - Variable in class JSim.aserver.ASInfo.OptimInfo

curveWgts() - Method in class JSim.data.DataCompare

curveWgts - Variable in class JSim.data.DataCompare.Info

D

Data - Class in JSim.data

Data(String, Unit) - Constructor for class JSim.data.Data

Data(String, String, Unit) - Constructor for class JSim.data.Data

data(int) - Method in class JSim.data.Data.List

data(String) - Method in class JSim.data.Data.List

data(int) - Method in class JSim.data.Data.NList

data(String) - Method in class JSim.data.Data.NList

data() - Method in class JSim.data.DataCompare

data - Variable in class JSim.data.DataCompare.Info

data(int) - Method in class JSim.data.PlotData

Data.List - Class in JSim.data

Data.NList - Class in JSim.data

Data.Subset - Class in JSim.data

dataAvg(Data, Data) - Method in class JSim.data.DataCompare

DataCompare - Class in JSim.data

DataCompare(Data.List) - Constructor for class JSim.data.DataCompare

DataCompare(DataCompare.Info) - Constructor for class JSim.data.DataCompare

DataCompare.IndividCrvResults - Class in JSim.data

DataCompare.Info - Class in JSim.data

DataFilter - Class in JSim.data

DataFilter(int) - Constructor for class JSim.data.DataFilter

dataForDesc(String) - Method in class JSim.data.Data.List

dataForDesc(String) - Method in class JSim.data.Data.NList

DataFormat - Class in JSim.data

DataFormat() - Constructor for class JSim.data.DataFormat

DataFormat.List - Class in JSim.data

dataForName(String) - Method in class JSim.data.Data.List

DataInfo - Class in JSim.data

DataInfo() - Constructor for class JSim.data.DataInfo

DataInfo(Data) - Constructor for class JSim.data.DataInfo

DataRange - Class in JSim.data

DataRange(boolean) - Constructor for class JSim.data.DataRange

DataRange(boolean, double, double) - Constructor for class JSim.data.DataRange

DataRange(boolean, Data) - Constructor for class JSim.data.DataRange

DataRange(boolean, Data[]) - Constructor for class JSim.data.DataRange

DataRange(boolean, Data.List) - Constructor for class JSim.data.DataRange

DataReader - Class in JSim.data

DataReader(DataFormat, Reader) - Constructor for class JSim.data.DataReader

dataSD(Data, Data) - Method in class JSim.data.DataCompare

DataStats - Class in JSim.data

DataStats() - Constructor for class JSim.data.DataStats

dataType() - Method in class JSim.data.NamedVal.Bool

dataType() - Method in class JSim.data.NamedVal

dataType() - Method in class JSim.data.NamedVal.Int

dataType() - Method in class JSim.data.NamedVal.Real

dataType() - Method in class JSim.data.NamedVal.Str

dataVal() - Method in class JSim.data.NamedVal

DataWriter - Class in JSim.data

DataWriter(DataFormat) - Constructor for class JSim.data.DataWriter

DataWriter.Blocked - Class in JSim.data

DEBUG - Static variable in class JSim.plan.Logger

DebugFileOutputStream(String) - Constructor for class JSim.util.UtilIO.DebugFileOutputStream

decode10(String, double[]) - Static method in class JSim.util.Hex

decode4(String, boolean, double[]) - Static method in class JSim.util.Hex

decode4(String) - Static method in class JSim.util.Hex

DECon - Class in JSim.plan

DECon(VarUsages, Tool) - Constructor for class JSim.plan.DECon

DECon(VarUsages, TEqn) - Constructor for class JSim.plan.DECon

defaultEncoding() - Method in class JSim.data.DataWriter

defaultEncoding() - Method in class JSim.data.JSMLDataWriter

DELAY - Static variable in class JSim.plan.TExpr

DELAY - Static variable in class JSim.plan.Tool

DELAY - Static variable in class JSim.plan.VarUsage

deleteDir1(File) - Static method in class JSim.util.UtilIO

deleteDir2(File) - Static method in class JSim.util.UtilIO

deleteOnExit1(File) - Static method in class JSim.util.UtilIO

delta() - Method in class JSim.data.RegularGridData

deltas - Variable in class JSim.aserver.ASInfo.Sens

deltas - Variable in class JSim.aserver.ASInfo.SensInfo

DerivBuilder - Class in JSim.plan

DerivBuilder(ToolBox) - Constructor for class JSim.plan.DerivBuilder

derivTool(Domain) - Method in class JSim.plan.ExprTool

derivTool(Domain) - Method in class JSim.plan.StateTool

desc() - Method in class JSim.data.Data

desc - Variable in class JSim.data.DataInfo

desc - Variable in class JSim.data.ProfileData

dest() - Method in class JSim.plan.SeqEdge

destateIter() - Method in class JSim.plan.MuCluster

destDir - Variable in class JSim.plan.Harvest

deString() - Method in class JSim.plan.DETool

DETool - Class in JSim.plan

DETool(TModel, Var) - Constructor for class JSim.plan.DETool

detools() - Method in class JSim.plan.MuBlock

diagInfo() - Method in class JSim.data.Data

diagInfo() - Method in class JSim.data.DataCompare

diagInfo() - Method in class JSim.data.DataFormat

diagInfo() - Method in class JSim.data.DataReader

diagInfo() - Method in class JSim.data.DataWriter

diagInfo() - Method in class JSim.data.JSReadable

diagInfo() - Method in class JSim.data.MoptData

diagInfo() - Method in class JSim.data.NamedVal

diagInfo() - Method in class JSim.data.OptimAlg

diagInfo() - Method in class JSim.data.TacData

diagInfo() - Method in class JSim.data.TextDataReader

diagInfo() - Method in class JSim.nml.opt.Genetic

diagInfo() - Method in class JSim.nml.opt.GGopt

diagInfo() - Method in class JSim.nml.opt.GridSearch

diagInfo() - Method in class JSim.nml.opt.NelderMead

diagInfo() - Method in class JSim.nml.opt.NL2sol

diagInfo() - Method in class JSim.nml.opt.Praxis

diagInfo() - Method in class JSim.nml.opt.PSwarm

diagInfo() - Method in class JSim.nml.opt.Sensop

diagInfo() - Method in class JSim.nml.opt.SimAnneal

diagInfo() - Method in class JSim.nml.opt.Simplex

diagInfo() - Method in class JSim.plan.DomainSet

diagInfo() - Method in class JSim.plan.TSubDom

DiagInfo - Interface in JSim.util

diagInfo() - Method in interface JSim.util.DiagInfo

diagInfo() - Method in class JSim.util.UniqList

dinfo1 - Variable in exception JSim.util.Xcept

dinfo2 - Variable in exception JSim.util.Xcept

dirNesting(File, int) - Static method in class JSim.util.UtilIO

dirNestingLevel(File, int) - Static method in class JSim.util.UtilIO

disconnect() - Method in class JSim.aserver.ASServer

dlist - Variable in class JSim.data.CSVDataWriter.Block

dlist - Variable in class JSim.data.PrettyDataWriter.Block

doc() - Method in class JSim.data.SourceBundler.URIInfo

domain(int) - Method in class JSim.aserver.ASVar

domain(Var) - Method in class JSim.plan.TModel

domain(String) - Method in class JSim.plan.TModel

domain() - Method in class JSim.plan.TSubDom

domain() - Method in class JSim.plan.VarUsage

DomainSet - Class in JSim.plan

DomainSet() - Constructor for class JSim.plan.DomainSet

DomainSet(ArrayList<Domain>) - Constructor for class JSim.plan.DomainSet

DomainSet(DomainSet) - Constructor for class JSim.plan.DomainSet

DomainSet(TModel, Expr.List) - Constructor for class JSim.plan.DomainSet

DomainSet(Domain) - Constructor for class JSim.plan.DomainSet

DomainTool - Class in JSim.plan

DomainTool(TModel, Var) - Constructor for class JSim.plan.DomainTool

DOUBLE_PRECISION - Static variable in class JSim.util.Util

dump(PrintStream) - Method in class JSim.plan.SeqBlock

dump(PrintWriter) - Method in class JSim.plan.SeqBlock

dump(SeqBlock, PrintWriter, String) - Method in class JSim.plan.SeqBlock

dump(InputStream, OutputStream) - Method in class JSim.util.ProcessQuery

dumpEdges(SeqGraph, PrintStream) - Static method in class JSim.plan.SeqIO

dumpEdgesByNode(SeqGraph, PrintStream) - Static method in class JSim.plan.SeqIO

dumpMemory() - Static method in class JSim.util.Util

dumpname(PrintStream) - Method in class JSim.util.NamedList

dumpPDE(PDEBlock, PrintWriter, String) - Method in class JSim.plan.SeqBlock

E

EASEL - Static variable in class JSim.gui.plugin.GModelEasel

easelCompile() - Method in interface JSim.gui.plugin.GModelEasel.Callbacks

easelStateChanged(int) - Method in interface JSim.gui.plugin.GModelEasel.Callbacks

edge(int) - Method in class JSim.plan.SeqPath

Edge(String, String) - Constructor for class JSim.plan.VarGraphML.Edge

eliteCutoff - Variable in class JSim.data.OptimArgs

ENABLE_SPLIT_BLOCKS - Variable in class JSim.plan.MuBlock

encode10(double[], boolean) - Static method in class JSim.util.Hex

encode4(double[], boolean) - Static method in class JSim.util.Hex

encode4(byte[]) - Static method in class JSim.util.Hex

encodings() - Method in class JSim.data.DataWriter

encodings() - Method in class JSim.data.JSMLDataWriter

enhanceReport() - Method in class JSim.aserver.ASInfo.Optim

ENTIRE - Static variable in class JSim.plan.TSubDom

eps - Variable in class JSim.data.OptimArgs

eqn() - Method in class JSim.plan.DECon

eqn - Variable in class JSim.plan.ImplicitPool.PoolEqn

eqns - Variable in class JSim.plan.Tool

equals(Object) - Method in class JSim.data.JSReadable

equals(Object) - Method in class JSim.plan.SeqEdge

equals(Object) - Method in class JSim.plan.SeqNode

equals(Object) - Method in class JSim.plan.SeqPullFinder.XEdge

equals(Object) - Method in class JSim.plan.SeqUntangler.PullParms

equals(TSubDom) - Method in class JSim.plan.TSubDom

equals(Object) - Method in class JSim.plan.VarGraphML.Edge

equals(Object) - Method in class JSim.plan.VarUsage

erf(double) - Static method in class JSim.util.UtilMath

erfc(double) - Static method in class JSim.util.UtilMath

ERROR - Static variable in class JSim.data.OptimResults

ERROR - Static variable in class JSim.plan.Logger

error(String) - Method in class JSim.plan.Logger

errors - Variable in class JSim.plan.Logger

errTol - Variable in class JSim.data.OptimArgs

events() - Method in class JSim.plan.MainGraph

exists(URI) - Method in class JSim.data.SourceBundler

expand(double) - Method in class JSim.data.DataRange

expand(double, double) - Method in class JSim.data.DataRange

expand(double, double, double) - Method in class JSim.data.DataRange

expand(DataRange) - Method in class JSim.data.DataRange

expand(Data) - Method in class JSim.data.DataRange

expand(Data[]) - Method in class JSim.data.DataRange

expand(Data.List) - Method in class JSim.data.DataRange

expandDeriv() - Method in class JSim.aserver.ASVar

exportLegacy(Document, Element, Data.List) - Method in class JSim.data.JSMLDataWriter

exportXML(Document, Element, Data.List) - Method in class JSim.data.JSMLDataWriter

exportXML(Document, Element, Data.List) - Method in class JSim.data.XMLDataWriter

exportXML(Element) - Method in class JSim.gui.plugin.GGraphic

exportXML(Element) - Method in class JSim.gui.plugin.GModelEasel

expr - Variable in class JSim.plan.ExprTool

expr() - Method in class JSim.plan.ImplicitBound

expr() - Method in class JSim.plan.TEqn

EXPR - Static variable in class JSim.plan.TExpr

expr() - Method in class JSim.plan.TExpr

EXPR - Static variable in class JSim.plan.Tool

EXPR - Static variable in class JSim.plan.VarUsage

exprs - Variable in class JSim.plan.ImplicitTool

exprs() - Method in class JSim.plan.ImplicitTool

ExprTool - Class in JSim.plan

ExprTool(VarUsage, TExpr) - Constructor for class JSim.plan.ExprTool

ExternTool - Class in JSim.plan

ExternTool(TModel, Var) - Constructor for class JSim.plan.ExternTool

F

f() - Method in class JSim.data.FFTData

factorMsg() - Method in class JSim.plan.PDE1Factors

factorMsg() - Method in class JSim.plan.PDEFactors

factors() - Method in class JSim.plan.DETool

factors(int) - Method in class JSim.plan.PDEBlock

fc() - Method in class JSim.plan.ProcTool

fcn(RTContext, double[]) - Method in class JSim.nml.opt.GGopt

fcn(RTContext, double[]) - Method in class JSim.nml.opt.NL2sol

fcn(RTContext, double[]) - Method in class JSim.nml.opt.Simplex

fcn1(OptimCallbacks, RTContext, double[], OptimResults) - Method in class JSim.nml.opt.NelderMead

fcn1(int, OptimCallbacks, RTContext, double[][], double[], OptimResults) - Method in class JSim.nml.opt.NelderMead

fft() - Method in class JSim.plan.SeqNode

FFTData - Class in JSim.data

FFTData(RealNData) - Constructor for class JSim.data.FFTData

file() - Method in class JSim.data.JSReadable

file() - Method in class JSim.data.Plugin

fileBaseName() - Method in class JSim.data.JSReadable

fileBaseName(File) - Static method in class JSim.util.UtilIO

fileName() - Method in class JSim.data.DataReader

fileName() - Method in class JSim.data.DataWriter

filename - Variable in class JSim.util.XceptPos

fileSuffix() - Method in class JSim.data.JSReadable

fileSuffix(File) - Static method in class JSim.util.UtilIO

fileType(String) - Static method in class JSim.data.JSReadable

fileType() - Method in class JSim.data.JSReadable

filter(Data) - Method in class JSim.data.DataFilter

finalRealVal() - Method in class JSim.aserver.ASVar

finalStep - Variable in class JSim.data.OptimResults

finalStep - Variable in class JSim.data.OptimResults.Info

first() - Method in class JSim.plan.DomainSet

firstForVar(Var) - Method in class JSim.plan.VarUsages

firstNode() - Method in class JSim.plan.SeqPath

fitData() - Method in class JSim.data.MoptData

fitData(int, int) - Method in class JSim.data.MoptData

Flags() - Constructor for class JSim.aserver.ASModel.Flags

flush() - Method in class JSim.util.NullOutputStream

format(int) - Method in class JSim.data.DataFormat.List

format(String) - Method in class JSim.data.DataFormat.List

format(double) - Method in class JSim.util.PrettyFormat

forSuffix(String) - Method in class JSim.data.DataFormat.List

frac - Variable in class JSim.aserver.ASInfo.RunStatus

free() - Method in class JSim.util.Lock

fullName() - Method in class JSim.aserver.ASVar

FZERO - Static variable in class JSim.data.OptimAlg

FZERO1 - Static variable in class JSim.data.ProfileData

FZERO2 - Static variable in class JSim.data.ProfileData

G

gamma(double) - Static method in class JSim.util.UtilMath

GAUSSIAN - Static variable in class JSim.data.NoiseMaker

Genetic - Class in JSim.nml.opt

Genetic() - Constructor for class JSim.nml.opt.Genetic

get(int) - Method in class JSim.plan.VarUsages

getAntimonyImports(String) - Static method in class JSim.data.SourceBundler

getArgsReport() - Method in class JSim.data.OptimReport

getAssign() - Method in class JSim.aserver.ASVar

getASVar(String) - Method in interface JSim.aserver.ASModel

getASVars() - Method in interface JSim.aserver.ASModel

getBound(VarUsage, int) - Method in class JSim.plan.ImplicitTool

getBounds() - Method in class JSim.plan.ImplicitTool

getBuildAlerts() - Method in interface JSim.aserver.ASModel

getByName(String) - Method in class JSim.util.NamedList

getCommonText(String) - Method in class JSim.aserver.ASServer

getCondNo() - Method in class JSim.data.SensMatrix

getConfLimits(double) - Method in class JSim.data.SensMatrix

getCovMatrix() - Method in class JSim.data.SensMatrix

getData(int, ASQuery) - Method in interface JSim.aserver.ASModel

getDefault() - Method in class JSim.aserver.ASVar

getDocument() - Method in class JSim.plan.XMMLWriter

getDomainNames() - Method in interface JSim.aserver.ASQuery

getEdgeArray() - Method in class JSim.plan.SeqGraph

getEdgeArrayFrom(SeqNode) - Method in class JSim.plan.SeqGraph

getEdgeArrayTo(SeqNode) - Method in class JSim.plan.SeqGraph

getEdges() - Method in class JSim.plan.SeqGraph

getEdgesFrom(SeqNode) - Method in class JSim.plan.SeqGraph

getEdgesTo(SeqNode) - Method in class JSim.plan.SeqGraph

getElements(Element) - Static method in class JSim.util.UtilXML

getFlags() - Method in interface JSim.aserver.ASModel

getFuncGenDefaults() - Method in class JSim.aserver.ASServer

getGraphML() - Method in class JSim.plan.Plan

getImports(SourceBundler.URIInfo) - Static method in class JSim.data.SourceBundler

getJComponent() - Method in class JSim.gui.plugin.GGraphic

getJComponent() - Method in class JSim.gui.plugin.GModelEasel

getJobInfo() - Method in interface JSim.aserver.ASModel

getJobStatus() - Method in interface JSim.aserver.ASModel

getMaxSen() - Method in class JSim.data.SensMatrix

getMaxSenH() - Method in class JSim.data.SensMatrix

getMessage() - Method in exception JSim.util.Xcept

getMML() - Method in class JSim.gui.plugin.GModelEasel

getMMLImports(String) - Static method in class JSim.data.SourceBundler

getMoptData() - Method in interface JSim.aserver.ASModel

getNamedVals() - Method in class JSim.gui.plugin.GModelEasel

getNames(int) - Method in class JSim.data.OptimAlg.NList

getNestedElement(Element, String[]) - Static method in class JSim.util.UtilXML

getNestedText(Element) - Static method in class JSim.util.UtilXML

getNode(String) - Method in class JSim.plan.SeqGraph

getNodeArray() - Method in class JSim.plan.SeqGraph

getNodes() - Method in class JSim.plan.SeqGraph

getNodes() - Method in class JSim.plan.SeqPath

getNodes(Node) - Static method in class JSim.util.UtilXML

getNormCovMatrix() - Method in class JSim.data.SensMatrix

getPhase(SeqNode) - Method in class JSim.plan.SeqGraph

getPhase(String) - Method in class JSim.plan.SeqGraph

getPhaseArray() - Method in class JSim.plan.SeqGraph

getPhaseNodeArray(SeqPhase) - Method in class JSim.plan.SeqGraph

getPhaseNodes(SeqPhase) - Method in class JSim.plan.SeqGraph

getPhases() - Method in class JSim.plan.SeqGraph

getPlanText() - Method in class JSim.plan.Plan

getProfile() - Method in interface JSim.aserver.ASModel

getProject() - Method in interface JSim.gui.plugin.GGraphic.Callbacks

getProperty(String) - Method in class JSim.aserver.ASServer

getReport() - Method in class JSim.data.OptimReport

getReport() - Method in class JSim.data.ProfileReport

getResourceAsStream(String) - Method in class JSim.util.JSClassLoader

getRTML() - Method in class JSim.gui.plugin.GModelEasel

getSensMatrix() - Method in class JSim.data.SensMatrix

getSolverDefaults() - Method in class JSim.aserver.ASServer

getStoreName(int) - Method in interface JSim.aserver.ASModel

getSuffix(URI) - Static method in class JSim.data.SourceBundler

getSuffixType(URI) - Static method in class JSim.data.SourceBundler

getText(int, String) - Method in interface JSim.aserver.ASModel

getText(Element) - Static method in class JSim.util.UtilXML

getTextWarnings(int, String) - Method in interface JSim.aserver.ASModel

getTranslatorWarnings() - Method in class JSim.aserver.ASServer

getUniqueElement(Element, String) - Static method in class JSim.util.UtilXML

getValueText(Element) - Static method in class JSim.util.UtilXML

getWgtDev() - Method in class JSim.data.SensMatrix

getWgtSensMatrix() - Method in class JSim.data.SensMatrix

getXML() - Method in class JSim.plan.PlanGraphML

getXMLType(Document) - Static method in class JSim.data.SourceBundler

GGopt - Class in JSim.nml.opt

GGopt() - Constructor for class JSim.nml.opt.GGopt

GGraphic - Class in JSim.gui.plugin

GGraphic(GGraphic.Callbacks) - Constructor for class JSim.gui.plugin.GGraphic

GGraphic.Callbacks - Interface in JSim.gui.plugin

ginx() - Method in class JSim.plan.SeqPhase

glegend() - Method in class JSim.data.Data

GModelEasel - Class in JSim.gui.plugin

GModelEasel(GModelEasel.Callbacks) - Constructor for class JSim.gui.plugin.GModelEasel

GModelEasel.Callbacks - Interface in JSim.gui.plugin

grab(long) - Method in class JSim.util.Lock

gradTol - Variable in class JSim.data.OptimArgs

graph() - Method in class JSim.plan.SeqPhase

GraphMLWriter - Class in JSim.data

GraphMLWriter() - Constructor for class JSim.data.GraphMLWriter

grid(int) - Method in class JSim.data.Data

grid(int) - Method in class JSim.data.GridData

grid(int) - Method in class JSim.data.PlotData

grid(int) - Method in class JSim.data.RealNData

GridData - Class in JSim.data

GridData(String, Unit) - Constructor for class JSim.data.GridData

gridInx - Variable in class JSim.data.Data.Subset

gridPos(int) - Method in class JSim.data.Data

grids - Variable in class JSim.data.RealNData.Info

GridSearch - Class in JSim.nml.opt

GridSearch() - Constructor for class JSim.nml.opt.GridSearch

gridVals(int) - Method in class JSim.data.Data

group() - Method in class JSim.data.Data

group - Variable in class JSim.data.DataInfo

guess(String, String) - Static method in class JSim.data.NamedVal

H

Harvest - Class in JSim.plan

Harvest(File) - Constructor for class JSim.plan.Harvest

harvest(File) - Method in class JSim.plan.Harvest

harvestDir(File) - Method in class JSim.plan.Harvest

harvestMod(File) - Method in class JSim.plan.Harvest

harvestProj(File) - Method in class JSim.plan.Harvest

hasCirc() - Method in class JSim.plan.SeqPath

hasCurr(Var) - Method in class JSim.plan.VarUsages

hasDeriv(Var) - Method in class JSim.plan.TModel

hasDEState(DECon) - Method in class JSim.plan.MuCluster

hasDisjointEdge() - Method in class JSim.plan.SeqPath

hasDomain(Domain) - Method in class JSim.plan.SeqMem.LoopStack

hasEdge(SeqEdge) - Method in class JSim.plan.SeqGraph

hasFFTWithoutPhaseCross() - Method in class JSim.plan.SeqPath

hasFFTWithoutPhaseCross2() - Method in class JSim.plan.SeqPath

hashCode() - Method in class JSim.plan.SeqEdge

hashCode() - Method in class JSim.plan.SeqNode

hashCode() - Method in class JSim.plan.SeqPullFinder.XEdge

hashCode() - Method in class JSim.plan.SeqUntangler.PullParms

hashCode() - Method in class JSim.plan.TSubDom

hashCode() - Method in class JSim.plan.VarGraphML.Edge

hashCode() - Method in class JSim.plan.VarUsage

hasLoop(String) - Method in class JSim.plan.SeqNode

hasNaNs(double[]) - Static method in class JSim.util.Util

hasNode(SeqNode) - Method in class JSim.plan.SeqGraph

hasPhase(SeqPhase) - Method in class JSim.plan.SeqGraph

hasSameGrid(GridData) - Method in class JSim.data.Data

hasSameGridOrder(Data) - Method in class JSim.data.Data

hasTool(Tool) - Method in class JSim.plan.MuCluster

hasVar(Var) - Method in class JSim.plan.VarUsages

Hex - Class in JSim.util

Hex() - Constructor for class JSim.util.Hex

hix - Variable in class JSim.data.Data.Subset

hosts - Variable in class JSim.aserver.ASInfo.Sandbox

I

I4BULL - Static variable in class JSim.data.JSReadable

I4BullDataFormat - Class in JSim.data

I4BullDataFormat() - Constructor for class JSim.data.I4BullDataFormat

I4BullDataReader - Class in JSim.data

I4BullDataReader(I4BullDataFormat, Reader) - Constructor for class JSim.data.I4BullDataReader

I4BullDataWriter - Class in JSim.data

I4BullDataWriter(DataFormat) - Constructor for class JSim.data.I4BullDataWriter

icTools - Variable in class JSim.plan.Tool

id - Variable in class JSim.aserver.ASInfo.Status

ignoreUnusedEquations() - Method in class JSim.plan.Plan

ImplicitBound - Class in JSim.plan

ImplicitBound(TRelation, VarUsage, int, TExpr) - Constructor for class JSim.plan.ImplicitBound

ImplicitBound.VuFactor - Class in JSim.plan

implicitBounds() - Method in class JSim.plan.MainGraph

ImplicitPool - Class in JSim.plan

ImplicitPool(ToolBox) - Constructor for class JSim.plan.ImplicitPool

ImplicitPool.PoolEqn - Class in JSim.plan

ImplicitTool - Class in JSim.plan

ImplicitTool(VarUsages, ArrayList<TExpr>) - Constructor for class JSim.plan.ImplicitTool

ImplicitTool(VarUsage, TExpr) - Constructor for class JSim.plan.ImplicitTool

importInfo(MoptData.Info) - Method in class JSim.data.MoptData

importInfo(OptimResults.Info) - Method in class JSim.data.OptimResults

importURIs - Variable in class JSim.data.SourceBundler.URIInfo

importXML(Element) - Method in class JSim.data.JSMLDataReader

importXML(Document) - Method in class JSim.data.XMLDataReader

importXML(Element) - Method in class JSim.data.XMLDataReader

importXML(Element) - Method in class JSim.gui.plugin.GGraphic

importXML(Element) - Method in class JSim.gui.plugin.GModelEasel

INDEX - Static variable in class JSim.plan.Harvest

indexOf(JSReadable) - Method in class JSim.data.JSReadable.List

indexOf(String) - Method in class JSim.util.StringList

IndividCrvResults(String, double, double, double) - Constructor for class JSim.data.DataCompare.IndividCrvResults

IndividCrvResults() - Constructor for class JSim.data.DataCompare.IndividCrvResults

info() - Method in class JSim.data.Data

info(Data.Subset) - Method in class JSim.data.Data

info() - Method in class JSim.data.Data.List

info() - Method in class JSim.data.DataCompare

Info(DataCompare) - Constructor for class JSim.data.DataCompare.Info

info(Data.Subset) - Method in class JSim.data.IrregularGridData

Info() - Constructor for class JSim.data.IrregularGridData.Info

Info(IrregularGridData) - Constructor for class JSim.data.IrregularGridData.Info

Info(MoptData) - Constructor for class JSim.data.MoptData.Info

Info(MoptData, boolean[]) - Constructor for class JSim.data.MoptData.Info

info() - Method in class JSim.data.NamedVal.List

info() - Method in class JSim.data.NamedVal.NList

Info() - Constructor for class JSim.data.OptimAlg.Info

info() - Method in class JSim.data.OptimResults

Info(OptimResults) - Constructor for class JSim.data.OptimResults.Info

info(Data.Subset) - Method in class JSim.data.PlotData

info(Data.Subset) - Method in class JSim.data.RealNData

Info() - Constructor for class JSim.data.RealNData.Info

Info(RealNData, Data.Subset) - Constructor for class JSim.data.RealNData.Info

info(Data.Subset) - Method in class JSim.data.RegularGridData

Info() - Constructor for class JSim.data.RegularGridData.Info

Info(RegularGridData) - Constructor for class JSim.data.RegularGridData.Info

initNaN() - Method in class JSim.plan.Plan

initTemp - Variable in class JSim.data.OptimArgs

INPUT - Static variable in class JSim.data.TacData

installSecurityMgr(String) - Static method in class JSim.util.Util

Int(String, int) - Constructor for class JSim.data.NamedVal.Int

integral() - Method in class JSim.data.RealNData

integral(double, double) - Method in class JSim.data.RealNData

intVal() - Method in class JSim.data.NamedVal.Int

intVal() - Method in class JSim.data.NamedVal

intVal(String, int) - Method in class JSim.data.NamedVal.NList

intVal() - Method in class JSim.data.NamedVal.Real

inx(int[]) - Method in class JSim.data.Data

inx(int[], int[]) - Static method in class JSim.data.Data

inx(String) - Method in class JSim.util.NamedList

inxwrt - Variable in class JSim.plan.Harvest

IrregularGridData - Class in JSim.data

IrregularGridData(String, Unit) - Constructor for class JSim.data.IrregularGridData

IrregularGridData(String, Unit, double[]) - Constructor for class JSim.data.IrregularGridData

IrregularGridData.Info - Class in JSim.data

isAlloc() - Method in class JSim.plan.VarMem

isAutoscale() - Method in class JSim.data.DataRange

isBC() - Method in class JSim.plan.DECon

isBC(Var, int) - Method in class JSim.plan.DECon

isBlank(String) - Static method in class JSim.util.Util

isBoundary() - Method in class JSim.plan.VarUsage

isBuilt() - Method in interface JSim.aserver.ASModel

isConst() - Method in interface JSim.aserver.ASQuery

isContentDubious() - Method in class JSim.data.JSReadable

isCurr() - Method in class JSim.plan.VarUsage

isCurr(Var) - Method in class JSim.plan.VarUsage

isDataSet() - Method in class JSim.data.JSReadable

isDomain() - Method in class JSim.aserver.ASVar

isEntire() - Method in class JSim.plan.TSubDom

isEqn() - Method in class JSim.plan.DECon

isEquals() - Method in class JSim.plan.TEqn

isEquals() - Method in class JSim.plan.TExpr

isFile() - Method in class JSim.data.JSReadable

isFree() - Method in class JSim.plan.VarMem

isInput() - Method in class JSim.aserver.ASVar

isInput(Tool) - Method in class JSim.plan.ToolBox

isJava15() - Static method in class JSim.util.Util

isLH() - Method in class JSim.plan.TSubDom

isLHBC(Var) - Method in class JSim.plan.DECon

isLinear() - Method in class JSim.plan.ImplicitTool

isLog() - Method in class JSim.data.DataRange

isMacos() - Static method in class JSim.util.Util

isMain() - Method in class JSim.plan.SeqPhase

isMin() - Method in class JSim.plan.VarUsage

isMin(Domain) - Method in class JSim.plan.VarUsage

isModel() - Method in class JSim.data.JSReadable

isOutgoing() - Method in class JSim.plan.SeqPullFinder.XEdge

isParSet() - Method in class JSim.data.JSReadable

isPDE() - Method in class JSim.plan.DETool

isPDE() - Method in class JSim.plan.MuCluster

isPPC() - Static method in class JSim.util.Util

isProbablyAntimony() - Method in class JSim.data.AntimonyCheck

isProject() - Method in class JSim.data.JSReadable

isPureDeriv(Var) - Method in class JSim.plan.TModel

isQuoted(String) - Static method in class JSim.util.Util

isRH() - Method in class JSim.plan.TSubDom

isRHBC(Var) - Method in class JSim.plan.DECon

isSame(double[], double[]) - Static method in class JSim.util.Util

isSolvable() - Method in class JSim.plan.VarUsage

isState() - Method in class JSim.plan.DECon

isText() - Method in class JSim.data.ColumnDataFormat

isText() - Method in class JSim.data.CSVDataFormat

isText() - Method in class JSim.data.DataFormat

isText() - Method in class JSim.data.I4BullDataFormat

isText() - Method in class JSim.data.LineDataFormat

isText() - Method in class JSim.data.MatlabDataFormat

isText() - Method in class JSim.data.PrettyDataFormat

isText() - Method in class JSim.data.TacDataFormat

isText() - Method in class JSim.data.XMLDataFormat

isTool() - Method in class JSim.plan.DECon

isURL() - Method in class JSim.data.JSReadable

isVerbose() - Method in class JSim.plan.Logger

isVerbose(String) - Method in class JSim.plan.Logger

isWin32() - Static method in class JSim.util.Util

isXML(int) - Static method in class JSim.data.SourceBundler

item - Variable in class JSim.plan.SeqMem.CodePoint

Item(String, int) - Constructor for class JSim.util.NamedList.Item

items() - Method in class JSim.plan.SeqBlock

itrNoImprove - Variable in class JSim.data.OptimArgs

J

JAVA - Static variable in class JSim.data.JSReadable

JAVA - Static variable in class JSim.data.SourceBundler

JAVA_HDR - Static variable in interface JSim.aserver.ASModel

javaDecode(String) - Static method in class JSim.util.Util

javaEncode() - Method in class JSim.util.StringList

javaEncode(String) - Static method in class JSim.util.Util

javaOSVersion() - Static method in class JSim.util.Util

jobCancel() - Method in interface JSim.util.MPDispatch.Job

jobCompleted(MPDispatch.Job) - Method in interface JSim.util.MPDispatch.Monitor

jobCompleted(MPDispatch.Job) - Method in class JSim.util.MPDispatch.SimpleMonitor

jobName() - Method in interface JSim.util.MPDispatch.Job

jobRunX(int) - Method in interface JSim.util.MPDispatch.Job

jobSkip() - Method in interface JSim.util.MPDispatch.Job

jobStarted(MPDispatch.Job) - Method in interface JSim.util.MPDispatch.Monitor

jobStarted(MPDispatch.Job) - Method in class JSim.util.MPDispatch.SimpleMonitor

JSClassLoader - Class in JSim.util

JSClassLoader(String, String) - Constructor for class JSim.util.JSClassLoader

JSim.aserver - package JSim.aserver

JSim.data - package JSim.data

JSim.gui.plugin - package JSim.gui.plugin

JSim.nml.opt - package JSim.nml.opt

JSim.plan - package JSim.plan

JSim.util - package JSim.util

JSIM_MODEL_CLASS - Static variable in interface JSim.aserver.ASModel

jsimHome() - Static method in class JSim.util.Util

jsimOSName() - Static method in class JSim.util.Util

JSML - Static variable in class JSim.data.JSReadable

JSMLDataFormat - Class in JSim.data

JSMLDataFormat() - Constructor for class JSim.data.JSMLDataFormat

JSMLDataReader - Class in JSim.data

JSMLDataReader(XMLDataFormat, Reader) - Constructor for class JSim.data.JSMLDataReader

JSMLDataWriter - Class in JSim.data

JSMLDataWriter(JSMLDataFormat) - Constructor for class JSim.data.JSMLDataWriter

JSReadable - Class in JSim.data

JSReadable(URL) - Constructor for class JSim.data.JSReadable

JSReadable(File) - Constructor for class JSim.data.JSReadable

JSReadable(String) - Constructor for class JSim.data.JSReadable

JSReadable.List - Class in JSim.data

K

k - Variable in class JSim.plan.ImplicitBound.VuFactor

L

labels() - Method in class JSim.aserver.ASVar

labelValues() - Method in class JSim.aserver.ASVar

lastEdge() - Method in class JSim.plan.SeqPath

lastModifiedDir(File) - Static method in class JSim.util.UtilIO

lastNode() - Method in class JSim.plan.SeqPath

lastUpdated - Variable in class JSim.data.OptimResults.Info

lastUpdated - Variable in class JSim.data.OptimResults

lct() - Method in class JSim.data.CSVDataWriter.Block

lct() - Method in class JSim.data.CSVDataWriter.Block0

lct() - Method in class JSim.data.CSVDataWriter.Block1

lct() - Method in class JSim.data.CSVDataWriter.Block2

lct() - Method in class JSim.data.CSVDataWriter.BlockN

lct() - Method in class JSim.data.PrettyDataWriter.Block

lct() - Method in class JSim.data.PrettyDataWriter.Block0

lct() - Method in class JSim.data.PrettyDataWriter.Block1

lct() - Method in class JSim.data.PrettyDataWriter.Block2

lct() - Method in class JSim.data.PrettyDataWriter.BlockN

legend() - Method in class JSim.data.Data

legendGrids() - Method in class JSim.data.Data

legendGrids() - Method in class JSim.data.GridData

legendGrids() - Method in class JSim.data.PlotData

legendGrids() - Method in class JSim.data.RealNData

lhbc - Variable in class JSim.plan.ReuseTool

LHBC - Static variable in class JSim.plan.TSubDom

lhs() - Method in class JSim.plan.TEqn

LineDataFormat - Class in JSim.data

LineDataFormat() - Constructor for class JSim.data.LineDataFormat

LineDataWriter - Class in JSim.data

LineDataWriter(LineDataFormat) - Constructor for class JSim.data.LineDataWriter

lineno - Variable in class JSim.util.XceptPos

lineNoMessage() - Method in class JSim.plan.Tool

linmat(int, int) - Method in class JSim.plan.ImplicitTool

List(int) - Constructor for class JSim.aserver.ASVar.List

List() - Constructor for class JSim.data.Data.List

List(int) - Constructor for class JSim.data.Data.List

List(Data[]) - Constructor for class JSim.data.Data.List

List(Data[][]) - Constructor for class JSim.data.Data.List

List(DataInfo[]) - Constructor for class JSim.data.Data.List

list() - Method in class JSim.data.Data.NList

List() - Constructor for class JSim.data.DataFormat.List

List(int) - Constructor for class JSim.data.JSReadable.List

List() - Constructor for class JSim.data.JSReadable.List

List() - Constructor for class JSim.data.NamedVal.List

List() - Constructor for class JSim.data.Plugin.List

lmax() - Method in class JSim.data.CSVDataWriter.Block

lmax() - Method in class JSim.data.PrettyDataWriter.Block

lmin() - Method in class JSim.data.CSVDataWriter.Block

lmin() - Method in class JSim.data.PrettyDataWriter.Block

loadClass(String, boolean) - Method in class JSim.util.JSClassLoader

loadClassData(String) - Method in class JSim.util.JSClassLoader

loadIntegral(TExpr.Map, IntegralIF) - Method in class JSim.plan.TExpr

loadIntegralNEW(TExpr.Map, IntegralIF) - Method in class JSim.plan.TExpr

loadMain(URI) - Method in class JSim.data.SourceBundler

loadMain(URI, int, String) - Method in class JSim.data.SourceBundler

loadVuxs() - Method in class JSim.plan.ImplicitPool.PoolEqn

localName() - Method in class JSim.plan.SeqPhase

Lock - Class in JSim.util

Lock(String) - Constructor for class JSim.util.Lock

log(String) - Method in class JSim.plan.DECon

log(String) - Method in class JSim.plan.DerivBuilder

log(String) - Method in class JSim.plan.ImplicitPool

log(String) - Method in class JSim.plan.Logger

log(String, String) - Method in class JSim.plan.Logger

log(Exception) - Method in class JSim.plan.Logger

log(int, String) - Method in class JSim.plan.Logger

log(String) - Method in class JSim.plan.MainBlock

log(String) - Method in class JSim.plan.MainGraph

log(String) - Method in class JSim.plan.MuBlock

log(String) - Method in class JSim.plan.Plan

log(int, String) - Method in class JSim.plan.Plan

log(String) - Method in class JSim.plan.TModel

log(Var) - Method in class JSim.plan.TModel

log(TEqn) - Method in class JSim.plan.TModel

log(XFuncCall) - Method in class JSim.plan.TModel

log(TEvent) - Method in class JSim.plan.TModel

log(String) - Method in class JSim.plan.Tool

log(String) - Method in class JSim.plan.ToolBox

log10(double) - Static method in class JSim.util.UtilMath

logErr - Variable in class JSim.data.OptimResults.Info

logErr - Variable in class JSim.data.OptimResults

logErr() - Method in class JSim.data.OptimResults

logger() - Method in class JSim.plan.DerivBuilder

Logger - Class in JSim.plan

Logger() - Constructor for class JSim.plan.Logger

logger() - Method in class JSim.plan.MainBlock

logger - Variable in class JSim.plan.Plan

logger() - Method in class JSim.plan.SeqGraphML

logger() - Method in class JSim.plan.TEqn

logger() - Method in class JSim.plan.TEvent

logger() - Method in class JSim.plan.TModel

logger() - Method in class JSim.plan.Tool

logger() - Method in class JSim.plan.ToolBox

logPhase(String) - Method in class JSim.plan.Plan

logX - Variable in class JSim.data.OptimResults.Info

logX - Variable in class JSim.data.OptimResults

logX(int, boolean) - Method in class JSim.data.OptimResults

logX(boolean) - Method in class JSim.data.OptimResults

longName() - Method in class JSim.data.ColumnDataFormat

longName() - Method in class JSim.data.CSVDataFormat

longName() - Method in class JSim.data.DataFormat

longName() - Method in class JSim.data.I4BullDataFormat

longName() - Method in class JSim.data.JSMLDataFormat

longName() - Method in class JSim.data.LineDataFormat

longName() - Method in class JSim.data.MatlabDataFormat

longName() - Method in class JSim.data.PrettyDataFormat

longName() - Method in class JSim.data.TacDataFormat

Loop(SeqBlock, Domain) - Constructor for class JSim.plan.SeqBlock.Loop

loopCounts - Variable in class JSim.aserver.ASInfo.Optim

loopDomains() - Method in class JSim.plan.PDEBlock

loopFor(Domain) - Method in class JSim.plan.SeqMem.LoopStack

Loops() - Constructor for class JSim.aserver.ASInfo.Loops

loops() - Method in class JSim.aserver.ASInfo.LoopsInfo

LOOPS - Static variable in interface JSim.aserver.ASModel

loops() - Method in class JSim.plan.SeqNode

loops() - Method in class JSim.plan.SeqPhase

loopSet() - Method in class JSim.plan.SeqPhase

LoopsInfo() - Constructor for class JSim.aserver.ASInfo.LoopsInfo

LoopsInfo(ASInfo.Loops) - Constructor for class JSim.aserver.ASInfo.LoopsInfo

loopsRun(ASInfo.Loops) - Method in interface JSim.aserver.ASModel

LoopStack() - Constructor for class JSim.plan.SeqMem.LoopStack

lox - Variable in class JSim.data.Data.Subset

LSFEA_tstep - Static variable in class JSim.data.ProfileData

LSFEA_xstep - Static variable in class JSim.data.ProfileData

lsfeaMsg() - Method in class JSim.plan.PDE1Factors

M

MacCormack_State - Static variable in class JSim.data.ProfileData

main(String[]) - Static method in class JSim.data.AntimonyCheck

main(String[]) - Static method in class JSim.data.DataRange

main(String[]) - Static method in class JSim.data.GraphMLWriter

main(String[]) - Static method in class JSim.data.JSReadable

main(String[]) - Static method in class JSim.data.NamedVal

main(String[]) - Static method in class JSim.data.NoiseMaker

main(String[]) - Static method in class JSim.data.Plugin

main(String[]) - Static method in class JSim.data.ProfileReport

main(String[]) - Static method in class JSim.data.RealNData

main(String[]) - Static method in class JSim.data.SourceBundler

main(String[]) - Static method in class JSim.data.StudTDist

main(String[]) - Static method in class JSim.data.XMLWriter

main(String[]) - Static method in class JSim.nml.opt.OptimFactory

main(String[]) - Static method in class JSim.nml.opt.Praxis

main(String[]) - Static method in class JSim.plan.Harvest

main(String[]) - Static method in class JSim.plan.ImplicitPool

main() - Method in class JSim.plan.Plan

main() - Method in class JSim.plan.SeqGraphML

main() - Method in class JSim.plan.SeqGraphMLNested

main() - Method in class JSim.plan.SeqPhase

main(String[]) - Static method in class JSim.util.Hex

main(String[]) - Static method in class JSim.util.PrettyFormat

main(String[]) - Static method in class JSim.util.ProcessQuery

main(String[]) - Static method in class JSim.util.UniqList

main(String[]) - Static method in class JSim.util.Util

main(String[]) - Static method in class JSim.util.UtilIO

main(String[]) - Static method in class JSim.util.UtilXML

MainBlock - Class in JSim.plan

MainBlock(ToolBox) - Constructor for class JSim.plan.MainBlock

MainGraph - Class in JSim.plan

MainGraph(MainBlock) - Constructor for class JSim.plan.MainGraph

mainOLD(String[]) - Static method in class JSim.data.SourceBundler

mainOLD2(String[]) - Static method in class JSim.data.SourceBundler

mainPhase() - Method in class JSim.plan.SeqGraph

makeArray(boolean[]) - Static method in class JSim.data.DataRange

makeData(DataInfo) - Static method in class JSim.data.Data

makeData(String, Data, Data, double, double, boolean) - Static method in class JSim.data.SensData

makeDEICParms() - Method in class JSim.plan.Plan

makeDerivTools() - Method in class JSim.plan.Plan

makeInputTools() - Method in class JSim.plan.Plan

makeNoisy(Data) - Method in class JSim.data.NoiseMaker

makeSequence() - Method in class JSim.plan.Plan

makeStateICParms() - Method in class JSim.plan.Plan

makeTool(TSubDom) - Method in class JSim.plan.ImplicitPool

matches(DETool) - Method in class JSim.plan.MuBlock

matches(DETool) - Method in class JSim.plan.ODEBlock

matches(DETool) - Method in class JSim.plan.PDEBlock

matchExprs - Variable in class JSim.aserver.ASInfo.Optim

matchExprs - Variable in class JSim.aserver.ASInfo.OptimInfo

matchRefs(Data.List) - Method in class JSim.data.DataCompare

matchReport - Variable in class JSim.data.OptimArgs

math() - Method in class JSim.plan.TModel

MatlabDataFormat - Class in JSim.data

MatlabDataFormat() - Constructor for class JSim.data.MatlabDataFormat

MatlabDataWriter - Class in JSim.data

MatlabDataWriter(DataFormat) - Constructor for class JSim.data.MatlabDataWriter

max() - Method in class JSim.data.Data

max() - Method in class JSim.data.DataRange

max() - Method in class JSim.data.IrregularGridData

max() - Method in class JSim.data.PlotData

max() - Method in class JSim.data.RealNData

max - Variable in class JSim.data.RegularGridData.Info

max() - Method in class JSim.data.RegularGridData

MAX - Static variable in class JSim.plan.ImplicitBound

MAX - Static variable in class JSim.plan.TExpr

MAX - Static variable in class JSim.plan.Tool

MAX - Static variable in class JSim.plan.VarUsage

maxCalls - Variable in class JSim.data.OptimArgs

maxDist - Variable in class JSim.data.OptimArgs

maxImplicitBlock() - Method in class JSim.plan.Plan

maxImplicitSearch() - Method in class JSim.plan.Plan

maxInertia - Variable in class JSim.data.OptimArgs

maxIters - Variable in class JSim.data.OptimArgs

maxStaticIters - Variable in class JSim.data.OptimArgs

mean(RealNData) - Static method in class JSim.data.DataStats

MEMORY_DYNAMIC - Static variable in interface JSim.aserver.ASModel

MEMORY_GRID_ALL - Static variable in interface JSim.aserver.ASModel

MEMORY_GRID_NTH - Static variable in interface JSim.aserver.ASModel

MEMORY_SELECTED - Static variable in interface JSim.aserver.ASModel

MEMORY_STATIC - Static variable in interface JSim.aserver.ASModel

memoryMessage() - Method in class JSim.aserver.ASServer

memoryMessage() - Static method in class JSim.util.Util

Message() - Constructor for class JSim.aserver.ASInfo.Message

Message(String, boolean, String) - Constructor for class JSim.aserver.ASInfo.Message

message(ASInfo.Message) - Method in interface JSim.aserver.ASServer.Messenger

midcrop(String, int) - Static method in class JSim.util.Util

min() - Method in class JSim.data.Data

min() - Method in class JSim.data.DataRange

min() - Method in class JSim.data.IrregularGridData

min() - Method in class JSim.data.PlotData

min() - Method in class JSim.data.RealNData

min - Variable in class JSim.data.RegularGridData.Info

min() - Method in class JSim.data.RegularGridData

MIN - Static variable in class JSim.plan.ImplicitBound

MIN - Static variable in class JSim.plan.TExpr

MIN - Static variable in class JSim.plan.Tool

MIN - Static variable in class JSim.plan.VarUsage

minCirc() - Method in class JSim.plan.SeqPath

minfit(int, double, double[], OptimResults) - Method in class JSim.nml.opt.Praxis

minInertia - Variable in class JSim.data.OptimArgs

minny(int, int, int, double, double, double, boolean, double[], double, double, double[], double[], double[], int, double, double, double, double, double, double, double, double, double, RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Praxis

minpos() - Method in class JSim.data.Data

minpos() - Method in class JSim.data.IrregularGridData

minpos() - Method in class JSim.data.PlotData

minpos() - Method in class JSim.data.RealNData

minpos() - Method in class JSim.data.RegularGridData

minus(DomainSet) - Method in class JSim.plan.DomainSet

minus(VarUsages) - Method in class JSim.plan.VarUsages

MML - Static variable in class JSim.data.JSReadable

MML - Static variable in class JSim.data.SourceBundler

MML - Static variable in class JSim.gui.plugin.GModelEasel

mmlIDs - Variable in class JSim.plan.Harvest

mmlModel() - Method in class JSim.plan.TModel

mode - Variable in class JSim.aserver.ASInfo.Status

model() - Method in class JSim.plan.DECon

model() - Method in class JSim.plan.DerivBuilder

model() - Method in class JSim.plan.ImplicitBound

model - Variable in class JSim.plan.MainBlock

model() - Method in class JSim.plan.MainGraph

model() - Method in class JSim.plan.Plan

model() - Method in class JSim.plan.SeqBlock

model() - Method in class JSim.plan.SeqMem

model - Variable in class JSim.plan.TEvent

model - Variable in class JSim.plan.TEvent.TAction

model() - Method in class JSim.plan.TExpr

model - Variable in class JSim.plan.Tool

model - Variable in class JSim.plan.ToolBox

model() - Method in class JSim.plan.TSubDom

model() - Method in class JSim.plan.VarUsage

model() - Method in class JSim.plan.VarUsages

modelID - Variable in class JSim.aserver.ASInfo.Message

modelID() - Method in interface JSim.aserver.ASModel

modelSource - Variable in class JSim.aserver.ASInfo.Build

modelSource - Variable in class JSim.aserver.ASInfo.BuildInfo

Mopt() - Constructor for class JSim.aserver.ASInfo.Mopt

mopt() - Method in class JSim.aserver.ASInfo.MoptInfo

MOPT - Static variable in interface JSim.aserver.ASModel

mopt() - Method in class JSim.data.MoptData.Info

MoptData - Class in JSim.data

MoptData(String[], int, int) - Constructor for class JSim.data.MoptData

MoptData.Info - Class in JSim.data

MoptInfo() - Constructor for class JSim.aserver.ASInfo.MoptInfo

MoptInfo(ASInfo.Mopt) - Constructor for class JSim.aserver.ASInfo.MoptInfo

moptRun(ASInfo.Mopt) - Method in interface JSim.aserver.ASModel

MPDispatch - Class in JSim.util

MPDispatch(String, MPDispatch.Job[], MPDispatch.Monitor) - Constructor for class JSim.util.MPDispatch

MPDispatch.Job - Interface in JSim.util

MPDispatch.Monitor - Interface in JSim.util

MPDispatch.SimpleMonitor - Class in JSim.util

MPDispatch.Worker - Class in JSim.util

msgs - Variable in class JSim.plan.Logger

MuBlock - Class in JSim.plan

MuBlock(SeqBlock, Hashtable<VarUsage, Tool>) - Constructor for class JSim.plan.MuBlock

MuBlockSplitter - Class in JSim.plan

MuBlockSplitter(MuBlock) - Constructor for class JSim.plan.MuBlockSplitter

MuCluster - Class in JSim.plan

MuCluster(MuBlock) - Constructor for class JSim.plan.MuCluster

MuCost - Class in JSim.plan

muDoms() - Method in class JSim.plan.MuBlock

MULTILINEAR_INTERP - Static variable in class JSim.data.RealNData

MULTILINEARNAN_INTERP - Static variable in class JSim.data.RealNData

mutationRate - Variable in class JSim.data.OptimArgs

mutationStep - Variable in class JSim.data.OptimArgs

N

n() - Method in class JSim.aserver.ASInfo.Loops

n() - Method in class JSim.data.DataCompare

name - Variable in class JSim.aserver.ASInfo.Build

name - Variable in class JSim.aserver.ASInfo.BuildInfo

name() - Method in class JSim.data.Data

name - Variable in class JSim.data.DataInfo

name() - Method in class JSim.data.NamedVal

name - Variable in class JSim.data.OptimAlg.Info

name() - Method in class JSim.data.OptimAlg

name - Variable in class JSim.data.ProfileData.Problem

name() - Method in class JSim.plan.SeqGraph

name() - Method in class JSim.plan.SeqNode

name() - Method in class JSim.plan.SeqPhase

name() - Method in class JSim.util.MPDispatch

name() - Method in interface JSim.util.Named

Named - Interface in JSim.util

NamedList - Class in JSim.util

NamedList() - Constructor for class JSim.util.NamedList

NamedList(int) - Constructor for class JSim.util.NamedList

NamedList.Item - Class in JSim.util

NamedVal - Class in JSim.data

namedVal(String) - Method in class JSim.data.NamedVal.NList

namedVal(String) - Method in interface JSim.data.NamedVal.Query

NamedVal.Bool - Class in JSim.data

NamedVal.Int - Class in JSim.data

NamedVal.List - Class in JSim.data

NamedVal.NList - Class in JSim.data

NamedVal.Query - Interface in JSim.data

NamedVal.Real - Class in JSim.data

NamedVal.Str - Class in JSim.data

NAMEDVALS - Static variable in class JSim.gui.plugin.GModelEasel

nauxs() - Method in class JSim.plan.MuCluster

ncallbacks - Variable in class JSim.data.ProfileData.Problem

nCalls - Variable in class JSim.data.OptimResults.Info

nCalls - Variable in class JSim.data.OptimResults

ncalls - Variable in class JSim.data.ProfileData.Problem

ncols() - Method in class JSim.util.TextColumns

ndes() - Method in class JSim.plan.MuCluster

ndim() - Method in interface JSim.aserver.ASQuery

ndim() - Method in class JSim.aserver.ASVar

ndim() - Method in class JSim.data.Data

ndim() - Method in class JSim.data.GridData

ndim() - Method in class JSim.data.PlotData

ndim() - Method in class JSim.data.RealNData

ndomains() - Method in class JSim.plan.TModel

NEAREST_INTERP - Static variable in class JSim.data.RealNData

nearestInx(double[]) - Method in class JSim.data.Data

nearestInx(double) - Method in class JSim.data.GridData

nearestInx(double) - Method in class JSim.data.IrregularGridData

nearestInx(double) - Method in class JSim.data.RegularGridData

nearlyZero(double) - Static method in class JSim.util.Util

nedges() - Method in class JSim.plan.SeqGraph

nedges() - Method in class JSim.plan.SeqPath

nedgesFrom(SeqNode) - Method in class JSim.plan.SeqGraph

nedgesTo(SeqNode) - Method in class JSim.plan.SeqGraph

needsBC(Domain, boolean) - Method in class JSim.plan.DETool

needsUnitCorrect - Variable in class JSim.aserver.ASModel.Flags

needsUnits - Variable in class JSim.aserver.ASModel.Flags

NelderMead - Class in JSim.nml.opt

NelderMead() - Constructor for class JSim.nml.opt.NelderMead

nerrors() - Method in class JSim.plan.Logger

newBest(double) - Method in class JSim.data.OptimResults

newInstance(Class[], Object[]) - Method in class JSim.data.Plugin

newInstance(ClassLoader, String, Class[], Object[]) - Static method in class JSim.data.Plugin

newModelRT() - Method in class JSim.aserver.ASServer

nextLoop() - Method in interface JSim.aserver.ASModel

nextStep(RTContext, double[], double[], double[], double) - Method in class JSim.nml.opt.SimAnneal

nextToLastNode() - Method in class JSim.plan.SeqPath

ninxs - Variable in class JSim.plan.Harvest

njobs() - Method in class JSim.util.MPDispatch

NL2sol - Class in JSim.nml.opt

NL2sol() - Constructor for class JSim.nml.opt.NL2sol

nlines() - Method in class JSim.data.CSVDataWriter

nlines() - Method in class JSim.data.PrettyDataWriter

NList(int) - Constructor for class JSim.aserver.ASVar.NList

NList(int) - Constructor for class JSim.data.Data.NList

NList() - Constructor for class JSim.data.NamedVal.NList

NList(NamedVal[]) - Constructor for class JSim.data.NamedVal.NList

NList() - Constructor for class JSim.data.OptimAlg.NList

NList(OptimAlg.Info[]) - Constructor for class JSim.data.OptimAlg.NList

nmatches() - Method in class JSim.aserver.ASInfo.Mopt

nmatches() - Method in class JSim.aserver.ASInfo.Optim

nmatches() - Method in class JSim.data.MoptData

nnodes() - Method in class JSim.plan.SeqGraph

noabort - Variable in class JSim.aserver.ASInfo.Mopt

noabort - Variable in class JSim.aserver.ASInfo.MoptInfo

nodeFFTs() - Method in class JSim.plan.SeqPath

nodeItem(SeqNode) - Method in class JSim.plan.SeqGraphML

nodeItem(SeqNode) - Method in class JSim.plan.SeqGraphMLNested

nodeItems() - Method in class JSim.plan.MainBlock

nodeItems() - Method in class JSim.plan.MainGraph

nodeString() - Method in class JSim.plan.DETool

nodeString() - Method in class JSim.plan.ImplicitBound

nodeString() - Method in class JSim.plan.SeqBlock

nodeString() - Method in interface JSim.plan.SeqItem

nodeString - Variable in class JSim.plan.TEvent

nodeString() - Method in class JSim.plan.TEvent

nodeString() - Method in class JSim.plan.Tool

nodeString() - Method in class JSim.plan.TRelation

nodeString() - Method in class JSim.plan.VarMem

nodeString() - Method in class JSim.plan.VarUsage

nodeString() - Method in class JSim.plan.VarUsages

NoiseMaker - Class in JSim.data

NoiseMaker() - Constructor for class JSim.data.NoiseMaker

NORMAL - Static variable in class JSim.data.DataFilter

NORMAL - Static variable in class JSim.data.OptimResults

normalize(double[][]) - Static method in class JSim.data.SensMatrix

npars() - Method in class JSim.aserver.ASInfo.Mopt

npars() - Method in class JSim.aserver.ASInfo.Optim

npars() - Method in class JSim.data.MoptData

nparsNeeded() - Method in class JSim.data.OptimAlg

NPDECALLBACKS - Static variable in class JSim.data.ProfileData

npdeCallbacks - Variable in class JSim.data.ProfileData.Problem

npoints - Variable in class JSim.data.OptimArgs

nresults() - Method in class JSim.data.MoptData.Info

nruns - Variable in class JSim.aserver.ASInfo.Status

nrunsBest - Variable in class JSim.aserver.ASInfo.Status

nrunsDone - Variable in class JSim.aserver.ASInfo.Status

nsamples() - Method in class JSim.data.Data

nsamples() - Method in class JSim.data.GridData

nsamples() - Method in class JSim.data.PlotData

nsamples(int) - Method in class JSim.data.PlotData

nsamples() - Method in class JSim.data.RealNData

nsegments() - Method in class JSim.aserver.ASInfo.Mopt

nsegments - Variable in class JSim.aserver.ASInfo.MoptInfo

nsegments() - Method in class JSim.data.MoptData

nsegmentsDone() - Method in class JSim.data.MoptData

nsolvers() - Method in class JSim.plan.PDEBlock

nstate - Variable in class JSim.data.ProfileData.Problem

nstores() - Method in interface JSim.aserver.ASModel

ntools() - Method in class JSim.plan.MuCluster

nu - Variable in class JSim.data.StudTDist

NullOutputStream - Class in JSim.util

NullOutputStream() - Constructor for class JSim.util.NullOutputStream

numParticles - Variable in class JSim.data.OptimArgs

nval(int) - Method in class JSim.data.NamedVal.List

nval(String) - Method in class JSim.data.NamedVal.List

nval(int) - Method in class JSim.data.NamedVal.NList

nval(String) - Method in class JSim.data.NamedVal.NList

nvals - Variable in class JSim.aserver.ASInfo.Loops

nvals - Variable in class JSim.aserver.ASInfo.LoopsInfo

nvals - Variable in class JSim.aserver.ASInfo.Mopt

nvals - Variable in class JSim.aserver.ASInfo.MoptInfo

nvars() - Method in class JSim.plan.VarUsages

nvus - Variable in class JSim.plan.ImplicitPool.PoolEqn

nwarnings() - Method in class JSim.plan.Logger

nworkers() - Method in class JSim.util.MPDispatch

nx() - Method in class JSim.data.OptimArgs

nx() - Method in class JSim.data.OptimResults

nx() - Method in class JSim.plan.PDEBlock

O

ODE - Static variable in class JSim.data.ProfileData

ODEBlock - Class in JSim.plan

ODEBlock(SeqBlock, DETool, Hashtable<VarUsage, Tool>) - Constructor for class JSim.plan.ODEBlock

OLDLINEAR_INTERP - Static variable in class JSim.data.RealNData

oldMain(String[]) - Static method in class JSim.util.PrettyFormat

onlyLettersAndDigits(String) - Static method in class JSim.util.Util

op() - Method in class JSim.plan.TRelation

optim - Variable in class JSim.aserver.ASInfo.Mopt

optim - Variable in class JSim.aserver.ASInfo.MoptInfo

Optim() - Constructor for class JSim.aserver.ASInfo.Optim

Optim(int, int) - Constructor for class JSim.aserver.ASInfo.Optim

optim() - Method in class JSim.aserver.ASInfo.OptimInfo

OPTIM - Static variable in interface JSim.aserver.ASModel

OptimAlg - Class in JSim.data

OptimAlg(OptimAlg.Info) - Constructor for class JSim.data.OptimAlg

OptimAlg.Info - Class in JSim.data

OptimAlg.NList - Class in JSim.data

optimAlgs() - Method in class JSim.aserver.ASServer

optimAlgsInfo() - Method in class JSim.aserver.ASServer

OptimArgs - Class in JSim.data

OptimArgs() - Constructor for class JSim.data.OptimArgs

OptimArgs(String, int) - Constructor for class JSim.data.OptimArgs

OptimArgs(int) - Constructor for class JSim.data.OptimArgs

OptimArgs(OptimArgs) - Constructor for class JSim.data.OptimArgs

OptimCallbacks - Interface in JSim.nml.opt

optimClassName - Variable in class JSim.data.OptimAlg.Info

optimClassName() - Method in class JSim.data.OptimAlg

OptimFactory - Class in JSim.nml.opt

OptimFactory() - Constructor for class JSim.nml.opt.OptimFactory

OptimInfo() - Constructor for class JSim.aserver.ASInfo.OptimInfo

OptimInfo(ASInfo.Optim) - Constructor for class JSim.aserver.ASInfo.OptimInfo

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Genetic

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.GGopt

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.GridSearch

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.NelderMead

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.NL2sol

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Optimizer

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Praxis

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.PSwarm

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Sensop

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.SimAnneal

optimize(RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Simplex

Optimizer - Class in JSim.nml.opt

Optimizer() - Constructor for class JSim.nml.opt.Optimizer

Optimizer() - Method in class JSim.nml.opt.Optimizer

OptimReport - Class in JSim.data

OptimReport(OptimResults, OptimAlg.NList) - Constructor for class JSim.data.OptimReport

OptimReport(OptimResults, OptimAlg) - Constructor for class JSim.data.OptimReport

optimResults() - Method in interface JSim.aserver.ASModel

optimResults(int) - Method in class JSim.data.MoptData

OptimResults - Class in JSim.data

OptimResults(OptimArgs) - Constructor for class JSim.data.OptimResults

OptimResults(OptimResults.Info) - Constructor for class JSim.data.OptimResults

OptimResults.Info - Class in JSim.data

optimRun(ASInfo.Optim) - Method in interface JSim.aserver.ASModel

options - Variable in class JSim.aserver.ASInfo.Build

options - Variable in class JSim.aserver.ASInfo.BuildInfo

origPhase - Variable in class JSim.plan.SeqUntangler.PullParms

out - Variable in class JSim.plan.Logger

outOfRange(double[]) - Method in class JSim.data.Data

outOfRange(double) - Method in class JSim.data.GridData

P

pappl - Variable in class JSim.plan.Harvest

parallelize() - Method in class JSim.plan.Plan

parData() - Method in class JSim.data.MoptData

parData(int) - Method in class JSim.data.MoptData

parData(String) - Method in class JSim.data.MoptData

parent() - Method in class JSim.plan.SeqPhase

parNames - Variable in class JSim.aserver.ASInfo.Sens

parNames - Variable in class JSim.aserver.ASInfo.SensInfo

parNames() - Method in class JSim.data.MoptData

parNeeded(int) - Method in class JSim.data.OptimAlg

parNeeded(String) - Method in class JSim.data.OptimAlg

parse(File) - Static method in class JSim.util.UtilXML

parse(String) - Static method in class JSim.util.UtilXML

parseQuery(String) - Method in interface JSim.aserver.ASModel

PARSET - Static variable in class JSim.data.JSReadable

parsNeeded - Variable in class JSim.data.OptimAlg.Info

Path(String) - Constructor for class JSim.data.SourceBundler.Path

pathFind(String, String) - Static method in class JSim.util.UtilIO

PDE - Static variable in class JSim.data.ProfileData

PDE1Factors - Class in JSim.plan

PDE1Factors(DETool) - Constructor for class JSim.plan.PDE1Factors

PDE_LSFEA - Static variable in interface JSim.aserver.ASModel

PDE_MacCormack - Static variable in interface JSim.aserver.ASModel

PDE_Solvers - Static variable in interface JSim.aserver.ASModel

PDE_Toms731 - Static variable in interface JSim.aserver.ASModel

PDEBlock - Class in JSim.plan

PDEBlock(SeqBlock, DETool, Hashtable<VarUsage, Tool>) - Constructor for class JSim.plan.PDEBlock

PDEFactors - Class in JSim.plan

PDEFactors(DETool) - Constructor for class JSim.plan.PDEFactors

phase - Variable in class JSim.aserver.ASInfo.RunStatus

phaseCrosses() - Method in class JSim.plan.SeqPath

phaseCrossesFFT() - Method in class JSim.plan.SeqPath

PHYSIOL - Static variable in class JSim.data.TacData

plan - Variable in class JSim.plan.MainBlock

Plan - Class in JSim.plan

Plan(Model) - Constructor for class JSim.plan.Plan

plan() - Method in class JSim.plan.SeqBlock

plan - Variable in class JSim.plan.ToolBox

PlanGraphML - Class in JSim.plan

PlanGraphML(Plan) - Constructor for class JSim.plan.PlanGraphML

PlotData - Class in JSim.data

PlotData(Data) - Constructor for class JSim.data.PlotData

PlotData(Data, Data[]) - Constructor for class JSim.data.PlotData

Plugin - Class in JSim.data

Plugin(File) - Constructor for class JSim.data.Plugin

plugin(int) - Method in class JSim.data.Plugin.List

plugin(String, String) - Method in class JSim.data.Plugin.List

Plugin.List - Class in JSim.data

plugins(String) - Method in class JSim.data.Plugin.List

pointWgts - Variable in class JSim.aserver.ASInfo.Optim

pointWgts - Variable in class JSim.aserver.ASInfo.OptimInfo

pointWgts - Variable in class JSim.data.DataCompare.Info

pointWgts() - Method in class JSim.data.DataCompare

POISSON - Static variable in class JSim.data.NoiseMaker

PoolEqn(TEqn, VarUsages) - Constructor for class JSim.plan.ImplicitPool.PoolEqn

pop() - Method in class JSim.plan.SeqMem.LoopStack

populationSize - Variable in class JSim.data.OptimArgs

pos - Variable in exception JSim.util.Xcept

Praxis - Class in JSim.nml.opt

Praxis() - Constructor for class JSim.nml.opt.Praxis

praxis(int, double, double, int, int, double[], RTContext, OptimResults, OptimCallbacks) - Method in class JSim.nml.opt.Praxis

praxisTol - Variable in class JSim.data.OptimArgs

precision() - Method in class JSim.data.DataWriter

precision() - Method in class JSim.util.PrettyFormat

pretty(double) - Method in class JSim.data.DataWriter

pretty(double) - Static method in class JSim.util.Util

pretty(double, boolean) - Static method in class JSim.util.Util

pretty(double[]) - Static method in class JSim.util.Util

pretty(int[]) - Static method in class JSim.util.Util

PrettyDataFormat - Class in JSim.data

PrettyDataFormat() - Constructor for class JSim.data.PrettyDataFormat

PrettyDataWriter - Class in JSim.data

PrettyDataWriter(PrettyDataFormat) - Constructor for class JSim.data.PrettyDataWriter

PrettyDataWriter.Block - Class in JSim.data

PrettyDataWriter.Block0 - Class in JSim.data

PrettyDataWriter.Block1 - Class in JSim.data

PrettyDataWriter.Block2 - Class in JSim.data

PrettyDataWriter.BlockN - Class in JSim.data

PrettyFormat - Class in JSim.util

PrettyFormat(int) - Constructor for class JSim.util.PrettyFormat

prettyPath() - Method in class JSim.data.JSReadable

prettyPath(File) - Static method in class JSim.util.UtilIO

print(String) - Method in class JSim.util.TextColumns

print(float) - Method in class JSim.util.TextColumns

print(double) - Method in class JSim.util.TextColumns

print(double, int) - Method in class JSim.util.TextColumns

print(int) - Method in class JSim.util.TextColumns

println() - Method in class JSim.util.TextColumns

printPDECallbacks(TextColumns, ProfileData.Problem) - Method in class JSim.data.ProfileReport

printStackTrace(PrintStream) - Method in exception JSim.util.Xcept

Problem() - Constructor for class JSim.data.ProfileData.Problem

problems - Variable in class JSim.data.ProfileData

process() - Method in class JSim.plan.Plan

process() - Method in class JSim.plan.SeqMem

processMML(File, String, String) - Method in class JSim.plan.Harvest

ProcessQuery - Class in JSim.util

ProcessQuery(Process, int) - Constructor for class JSim.util.ProcessQuery

ProcTool - Class in JSim.plan

ProcTool(TModel, XFuncCall) - Constructor for class JSim.plan.ProcTool

ProfileData - Class in JSim.data

ProfileData() - Constructor for class JSim.data.ProfileData

ProfileData.Problem - Class in JSim.data

ProfileReport - Class in JSim.data

ProfileReport(ProfileData) - Constructor for class JSim.data.ProfileReport

PROJECT - Static variable in class JSim.data.JSReadable

PROPORTIONAL - Static variable in class JSim.data.NoiseMaker

PSwarm - Class in JSim.nml.opt

PSwarm() - Constructor for class JSim.nml.opt.PSwarm

pullDisjoint() - Method in class JSim.plan.Plan

PullParms(SeqPhase, SeqPhase, String) - Constructor for class JSim.plan.SeqUntangler.PullParms

pullPhase - Variable in class JSim.plan.SeqUntangler.PullParms

pureDerivDom(Var) - Method in class JSim.plan.TModel

push(SeqBlock.Loop) - Method in class JSim.plan.SeqMem.LoopStack

Q

qexpr() - Method in class JSim.plan.VarUsage

qstat(Domain) - Method in class JSim.plan.VarUsage

QUERY - Static variable in class JSim.plan.TExpr

QUERY - Static variable in class JSim.plan.Tool

QUERY - Static variable in class JSim.plan.VarUsage

QueryTool - Class in JSim.plan

QueryTool(VarUsage) - Constructor for class JSim.plan.QueryTool

QueryTool(VarUsage, VarUsage) - Constructor for class JSim.plan.QueryTool

R

r8_epsilon() - Method in class JSim.nml.opt.Praxis

r8_hypot(double, double) - Method in class JSim.nml.opt.Praxis

r8_max(double, double) - Method in class JSim.nml.opt.Praxis

r8_min(double, double) - Method in class JSim.nml.opt.Praxis

r8_uniform_01(int, OptimResults) - Method in class JSim.nml.opt.Praxis

r8mat_print(int, int, double[], String) - Method in class JSim.nml.opt.Praxis

r8mat_print_some(int, int, double[], int, int, int, int, String) - Method in class JSim.nml.opt.Praxis

r8mat_transpose_in_place(int, double[]) - Method in class JSim.nml.opt.Praxis

r8vec_copy(int, double[]) - Method in class JSim.nml.opt.Praxis

r8vec_max(int, double[]) - Method in class JSim.nml.opt.Praxis

r8vec_min(int, double[]) - Method in class JSim.nml.opt.Praxis

r8vec_norm(int, double[]) - Method in class JSim.nml.opt.Praxis

r8vec_print(int, double[], String) - Method in class JSim.nml.opt.Praxis

randomSeed - Variable in class JSim.data.OptimArgs

rdr() - Method in class JSim.data.TextDataReader

read(File) - Static method in class JSim.plan.SeqIO

readable(int) - Method in class JSim.data.JSReadable.List

readBytes() - Method in class JSim.data.JSReadable

readBytes(InputStream) - Static method in class JSim.util.UtilIO

readBytes(File) - Static method in class JSim.util.UtilIO

readBytes(URL) - Static method in class JSim.util.UtilIO

readData() - Method in class JSim.data.ColumnDataReader

readData() - Method in class JSim.data.CSVDataReader

readData(File) - Method in class JSim.data.DataFormat.List

readData() - Method in class JSim.data.DataReader

readData() - Method in class JSim.data.I4BullDataReader

readData() - Method in class JSim.data.TacDataReader

readData() - Method in class JSim.data.XMLDataReader

readFirstLine() - Method in class JSim.data.JSReadable

readGUI - Variable in class JSim.aserver.ASInfo.Sandbox

readPath - Variable in class JSim.aserver.ASInfo.Sandbox

readSupported(boolean) - Method in class JSim.data.ColumnDataFormat

readSupported(boolean) - Method in class JSim.data.CSVDataFormat

readSupported(boolean) - Method in class JSim.data.DataFormat

readSupported(boolean) - Method in class JSim.data.I4BullDataFormat

readSupported(boolean) - Method in class JSim.data.JSMLDataFormat

readSupported(boolean) - Method in class JSim.data.TacDataFormat

readText() - Method in class JSim.data.JSReadable

readText(Reader) - Static method in class JSim.util.UtilIO

readText(InputStream) - Static method in class JSim.util.UtilIO

readText(File) - Static method in class JSim.util.UtilIO

readText(URL) - Static method in class JSim.util.UtilIO

readText(byte[]) - Static method in class JSim.util.UtilIO

Real(String, double) - Constructor for class JSim.data.NamedVal.Real

RealNData - Class in JSim.data

RealNData(String, Unit, GridData[]) - Constructor for class JSim.data.RealNData

RealNData(String, Unit, GridData[], double[]) - Constructor for class JSim.data.RealNData

RealNData(GridData) - Constructor for class JSim.data.RealNData

RealNData(RealNData, GridData[], boolean) - Constructor for class JSim.data.RealNData

RealNData.Info - Class in JSim.data

realVal(int) - Method in class JSim.data.Data

realVal(double[]) - Method in class JSim.data.Data

realVal(double[]) - Method in class JSim.data.GridData

realVal(int) - Method in class JSim.data.IrregularGridData

realVal() - Method in class JSim.data.NamedVal.Int

realVal(String, double) - Method in class JSim.data.NamedVal.NList

realVal() - Method in class JSim.data.NamedVal.Real

realVal() - Method in class JSim.data.NamedVal

realVal(int) - Method in class JSim.data.PlotData

realVal(double[]) - Method in class JSim.data.PlotData

realVal(int[]) - Method in class JSim.data.RealNData

realVal(int) - Method in class JSim.data.RealNData

realVal() - Method in class JSim.data.RealNData

realVal(double[]) - Method in class JSim.data.RealNData

realVal(int) - Method in class JSim.data.RegularGridData

realValMulti(double[]) - Method in class JSim.data.RealNData

realValMultiNaN(double[]) - Method in class JSim.data.RealNData

realValOld(double[]) - Method in class JSim.data.RealNData

realValVeldhuizen(double[]) - Method in class JSim.data.RealNData

refData - Variable in class JSim.aserver.ASInfo.Mopt

refData - Variable in class JSim.aserver.ASInfo.MoptInfo

refData - Variable in class JSim.aserver.ASInfo.Optim

refData - Variable in class JSim.aserver.ASInfo.OptimInfo

refs - Variable in class JSim.data.DataCompare.Info

refs() - Method in class JSim.data.DataCompare

regrab(long) - Method in class JSim.util.Lock

RegularGridData - Class in JSim.data

RegularGridData(String, Unit, double, double, int) - Constructor for class JSim.data.RegularGridData

RegularGridData.Info - Class in JSim.data

relation() - Method in class JSim.plan.ImplicitBound

relations() - Method in class JSim.plan.MainGraph

rem(double, double) - Static method in class JSim.util.UtilMath

remove(String) - Method in class JSim.util.NamedList

remove(String) - Method in class JSim.util.StringList

remove(StringList) - Method in class JSim.util.StringList

removeCR(String) - Static method in class JSim.util.Util

removeElementsExceptID(Element, String) - Static method in class JSim.util.UtilXML

removeTrailingWhitespace(String) - Static method in class JSim.util.Util

rename(String, String) - Method in class JSim.util.NamedList

replace(Named) - Method in class JSim.util.NamedList

reportPrec - Variable in class JSim.data.OptimArgs

RESAMPLE - Static variable in class JSim.data.DataFilter

residual(int, boolean) - Method in class JSim.data.DataCompare

residuals(boolean) - Method in class JSim.data.DataCompare

restrict(TSubDom) - Method in class JSim.plan.ImplicitBound

restrict(TSubDom) - Method in class JSim.plan.VarUsage

restrict(TSubDom) - Method in class JSim.plan.VarUsages

retryItems() - Method in class JSim.plan.MainGraph

ReuseTool - Class in JSim.plan

ReuseTool(Tool, Domain) - Constructor for class JSim.plan.ReuseTool

RHBC - Static variable in class JSim.plan.TSubDom

rhs() - Method in class JSim.plan.TEqn

rmsData() - Method in class JSim.data.MoptData

rmsErr - Variable in class JSim.data.DataCompare.IndividCrvResults

rmsError() - Method in class JSim.data.DataCompare

rootName() - Method in class JSim.data.JSMLDataFormat

rootName() - Method in class JSim.data.XMLDataFormat

rootName() - Method in class JSim.data.XMLDataReader

rootName() - Method in class JSim.data.XMLDataWriter

round(double, double) - Static method in class JSim.util.Util

rrmsErrAvg - Variable in class JSim.data.DataCompare.IndividCrvResults

rrmsErrSD - Variable in class JSim.data.DataCompare.IndividCrvResults

RTML - Static variable in class JSim.gui.plugin.GModelEasel

run(int) - Method in class JSim.data.TacData

run(int) - Method in class JSim.util.MPDispatch

run() - Method in class JSim.util.MPDispatch.Worker

run() - Method in class JSim.util.ProcessQuery

runMethod(Object, String, Class[], Object[]) - Static method in class JSim.data.Plugin

runName - Variable in class JSim.aserver.ASInfo.Status

runNames - Variable in class JSim.aserver.ASInfo.Loops

runNames - Variable in class JSim.aserver.ASInfo.LoopsInfo

runStat(int) - Method in class JSim.aserver.ASInfo.Status

runStats - Variable in class JSim.aserver.ASInfo.Status

RunStatus() - Constructor for class JSim.aserver.ASInfo.RunStatus

RunStatus(ASInfo.RunStatus) - Constructor for class JSim.aserver.ASInfo.RunStatus

S

safe(String) - Static method in class JSim.data.XMLWriter

safeName(String) - Static method in class JSim.util.Util

sameAs(Expr) - Method in class JSim.aserver.ASVar

sameAs(GridData) - Method in class JSim.data.GridData

sameSamplesAs(GridData) - Method in class JSim.data.GridData

sameSamplesAs(GridData, double) - Method in class JSim.data.GridData

sameSamplesAs(GridData) - Method in class JSim.data.RegularGridData

SAMPLE - Static variable in class JSim.data.TacData

samples() - Method in class JSim.data.Data

samples() - Method in class JSim.data.GridData

samples - Variable in class JSim.data.IrregularGridData.Info

samples() - Method in class JSim.data.IrregularGridData

samples() - Method in class JSim.data.PlotData

samples(int) - Method in class JSim.data.PlotData

samples - Variable in class JSim.data.RealNData.Info

samples(Data.Subset) - Method in class JSim.data.RealNData

samples() - Method in class JSim.data.RealNData

Sandbox() - Constructor for class JSim.aserver.ASInfo.Sandbox

saveLogs - Variable in class JSim.data.OptimArgs

saveOptimResults - Variable in class JSim.aserver.ASInfo.Mopt

saveOptimResults - Variable in class JSim.aserver.ASInfo.MoptInfo

saveUntanglerGraphs() - Method in class JSim.plan.Plan

SBML - Static variable in class JSim.data.SourceBundler

sd(RealNData) - Static method in class JSim.data.DataStats

sd(RealNData, double) - Static method in class JSim.data.DataStats

sdom() - Method in class JSim.plan.ProcTool

segmentDone(int) - Method in class JSim.data.MoptData

segmentsDone() - Method in class JSim.data.MoptData

selectMethod - Variable in class JSim.data.OptimArgs

sendMsg(OptimResults, int) - Method in class JSim.nml.opt.Praxis

sendMsg(OptimResults, int) - Method in class JSim.nml.opt.PSwarm

sendMsg(OptimResults, int) - Method in class JSim.nml.opt.Sensop

sendMsg(OptimResults, int) - Method in class JSim.nml.opt.SimAnneal

Sens(int) - Constructor for class JSim.aserver.ASInfo.Sens

sens() - Method in class JSim.aserver.ASInfo.SensInfo

SENS - Static variable in interface JSim.aserver.ASModel

SensData - Class in JSim.data

SensData() - Constructor for class JSim.data.SensData

SensInfo() - Constructor for class JSim.aserver.ASInfo.SensInfo

SensInfo(ASInfo.Sens) - Constructor for class JSim.aserver.ASInfo.SensInfo

sensMatNeeded - Variable in class JSim.data.OptimAlg.Info

sensMatNeeded() - Method in class JSim.data.OptimAlg

SensMatrix - Class in JSim.data

SensMatrix(double[], double[], Data.List, Data.List, Data.List[], Data.List, double[]) - Constructor for class JSim.data.SensMatrix

Sensop - Class in JSim.nml.opt

Sensop() - Constructor for class JSim.nml.opt.Sensop

sensRun(ASInfo.Sens) - Method in interface JSim.aserver.ASModel

separateLines() - Method in class JSim.util.StringList

SeqBlock - Class in JSim.plan

SeqBlock(TModel) - Constructor for class JSim.plan.SeqBlock

SeqBlock(SeqBlock) - Constructor for class JSim.plan.SeqBlock

SeqBlock.Loop - Class in JSim.plan

SeqEdge - Class in JSim.plan

SeqEdge(SeqNode, SeqNode) - Constructor for class JSim.plan.SeqEdge

SeqGraph - Class in JSim.plan

SeqGraph() - Constructor for class JSim.plan.SeqGraph

SeqGraph(SeqGraph) - Constructor for class JSim.plan.SeqGraph

SeqGraphCirc - Class in JSim.plan

SeqGraphCirc() - Constructor for class JSim.plan.SeqGraphCirc

SeqGraphCirc(SeqGraph) - Constructor for class JSim.plan.SeqGraphCirc

SeqGraphML - Class in JSim.plan

SeqGraphML(PlanGraphML) - Constructor for class JSim.plan.SeqGraphML

SeqGraphMLNested - Class in JSim.plan

SeqGraphMLNested(PlanGraphML) - Constructor for class JSim.plan.SeqGraphMLNested

SeqGraphXcons - Class in JSim.plan

SeqGraphXcons(SeqGraph, LinkedHashSet<SeqNode>, LinkedHashSet<SeqNode>, boolean) - Constructor for class JSim.plan.SeqGraphXcons

SeqIO - Class in JSim.plan

SeqIO() - Constructor for class JSim.plan.SeqIO

SeqItem - Interface in JSim.plan

seqLoops() - Method in class JSim.plan.ImplicitBound

seqLoops() - Method in class JSim.plan.SeqBlock

seqLoops() - Method in interface JSim.plan.SeqItem

seqLoops - Variable in class JSim.plan.TEvent

seqLoops() - Method in class JSim.plan.TEvent

seqLoops - Variable in class JSim.plan.Tool

seqLoops() - Method in class JSim.plan.Tool

seqLoops - Variable in class JSim.plan.TRelation

seqLoops() - Method in class JSim.plan.TRelation

seqLoops() - Method in class JSim.plan.VarMem

seqMaxPulls() - Method in class JSim.plan.Plan

SeqMem - Class in JSim.plan

SeqMem(MainBlock) - Constructor for class JSim.plan.SeqMem

SeqMem.CodePoint - Class in JSim.plan

SeqMem.LoopStack - Class in JSim.plan

SeqNode - Class in JSim.plan

SeqNode(String) - Constructor for class JSim.plan.SeqNode

SeqPath - Class in JSim.plan

SeqPath() - Constructor for class JSim.plan.SeqPath

SeqPath(SeqPath, SeqEdge) - Constructor for class JSim.plan.SeqPath

SeqPhase - Class in JSim.plan

SeqPhase(SeqGraph) - Constructor for class JSim.plan.SeqPhase

SeqPhase(SeqPhase, String) - Constructor for class JSim.plan.SeqPhase

SeqPhase(SeqGraph, SeqPhase, String) - Constructor for class JSim.plan.SeqPhase

SeqPullFinder - Class in JSim.plan

SeqPullFinder(SeqGraph, Plan) - Constructor for class JSim.plan.SeqPullFinder

SeqPullFinder.XEdge - Class in JSim.plan

seqTools() - Method in class JSim.plan.ToolBox

SeqUntangler - Class in JSim.plan

SeqUntangler(SeqGraph, Plan) - Constructor for class JSim.plan.SeqUntangler

SeqUntangler.PullParms - Class in JSim.plan

serverSide() - Method in class JSim.data.Plugin

set(int, double) - Method in class JSim.data.RealNData

set(int[], double) - Method in class JSim.data.RealNData

set(double) - Method in class JSim.data.RealNData

set(double[]) - Method in class JSim.data.RealNData

set(Data.Subset, double[]) - Method in class JSim.data.RealNData

set(Named) - Method in class JSim.util.NamedList

setAddMethod(int) - Method in class JSim.data.NoiseMaker

setAssign(String) - Method in class JSim.aserver.ASVar

setAutoscaleOff() - Method in class JSim.data.DataRange

setBlocks(Data.List) - Method in class JSim.data.CSVDataWriter

setBlocks(Data.List) - Method in class JSim.data.DataWriter.Blocked

setBlocks(Data.List) - Method in class JSim.data.PrettyDataWriter

setCosts(double, double) - Method in class JSim.plan.MuCluster

setCurveWgts(double[]) - Method in class JSim.data.DataCompare

setData(Data.List) - Method in class JSim.data.DataCompare

setDebug(boolean) - Method in class JSim.plan.XMMLWriter

setDefaultLocale(String) - Static method in class JSim.util.Util

setDelta(double) - Method in class JSim.data.DataFilter

setDesc(String) - Method in class JSim.data.Data

setDim(int) - Method in class JSim.data.DataFilter

setDist(int) - Method in class JSim.data.NoiseMaker

setDone(int) - Method in class JSim.data.MoptData

setEncoding(String) - Method in class JSim.data.DataWriter

setEncoding(String) - Method in class JSim.data.JSMLDataWriter

setFileName(String) - Method in class JSim.data.DataReader

setFileName(String) - Method in class JSim.data.DataWriter

setFitData(int, int, Data) - Method in class JSim.data.MoptData

setFuncGenNames(String[]) - Method in interface JSim.aserver.ASModel

setGroup(String) - Method in class JSim.data.Data

setIC(Tool) - Method in class JSim.plan.StateTool

setInterp(int) - Method in class JSim.data.RealNData

setMagnitude(double) - Method in class JSim.data.NoiseMaker

setMax(double) - Method in class JSim.data.DataFilter

setMaxPulls(int) - Method in class JSim.plan.SeqUntangler

setMin(double) - Method in class JSim.data.DataFilter

setName(String) - Method in class JSim.data.Data

setOptimResults(int, OptimResults) - Method in class JSim.data.MoptData

setOptions(NamedVal.NList) - Method in class JSim.plan.Plan

setParData(int, int, double) - Method in class JSim.data.MoptData

setPointWgts(Data.List) - Method in class JSim.data.DataCompare

setPrecision(int) - Method in class JSim.data.DataWriter

setProperties(NamedVal[]) - Method in class JSim.aserver.ASServer

setProperty(NamedVal) - Method in class JSim.aserver.ASServer

setRandomSeed(int) - Method in class JSim.data.NoiseMaker

setRelativeTo(JSReadable) - Method in class JSim.data.JSReadable

setRMSData(int, double) - Method in class JSim.data.MoptData

setSome(double[]) - Method in class JSim.data.RealNData

setStream(PrintStream) - Method in class JSim.plan.Logger

setT(Domain) - Method in class JSim.plan.StateTool

setTimeout(int) - Method in class JSim.plan.Logger

setType(int) - Method in class JSim.data.DataFilter

setVal(String, boolean) - Method in class JSim.data.NamedVal.NList

setVal(String, int) - Method in class JSim.data.NamedVal.NList

setVal(String, double) - Method in class JSim.data.NamedVal.NList

setVal(String, String) - Method in class JSim.data.NamedVal.NList

setVerbose(String) - Method in class JSim.plan.Logger

setVerbose(String) - Method in class JSim.plan.Plan

setZeroThresh(double) - Method in class JSim.data.DataWriter

setZeroThresh(double) - Method in class JSim.util.PrettyFormat

sformat(float) - Static method in class JSim.util.PrettyFormat

sformat(double) - Static method in class JSim.util.PrettyFormat

sformat(double, int) - Static method in class JSim.util.PrettyFormat

shortName() - Method in class JSim.data.ColumnDataFormat

shortName() - Method in class JSim.data.CSVDataFormat

shortName() - Method in class JSim.data.DataFormat

shortName() - Method in class JSim.data.I4BullDataFormat

shortName() - Method in class JSim.data.JSMLDataFormat

shortName() - Method in class JSim.data.LineDataFormat

shortName() - Method in class JSim.data.MatlabDataFormat

shortName() - Method in class JSim.data.PrettyDataFormat

shortName() - Method in class JSim.data.TacDataFormat

showFileSize(File) - Static method in class JSim.util.UtilIO

SimAnneal - Class in JSim.nml.opt

SimAnneal() - Constructor for class JSim.nml.opt.SimAnneal

SimpleMonitor() - Constructor for class JSim.util.MPDispatch.SimpleMonitor

Simplex - Class in JSim.nml.opt

Simplex() - Constructor for class JSim.nml.opt.Simplex

simplify() - Method in class JSim.aserver.ASVar

SINGLE - Static variable in interface JSim.aserver.ASModel

SINGLE_PRECISION - Static variable in class JSim.util.Util

singleRun(NamedVal.NList) - Method in interface JSim.aserver.ASModel

sinh(double) - Static method in class JSim.util.UtilMath

size() - Method in class JSim.plan.SeqBlock

size() - Method in class JSim.plan.VarMem

size() - Method in class JSim.plan.VarUsages

skipOneJob() - Method in class JSim.util.MPDispatch

socLearn - Variable in class JSim.data.OptimArgs

soleVU() - Method in class JSim.plan.TExpr

solverMsg(int) - Method in class JSim.plan.PDE1Factors

solverMsg(int) - Method in class JSim.plan.PDEBlock

solverMsg(int) - Method in class JSim.plan.PDEFactors

solverName(int) - Method in class JSim.plan.PDEBlock

SourceBundler - Class in JSim.data

SourceBundler(String) - Constructor for class JSim.data.SourceBundler

SourceBundler.Path - Class in JSim.data

SourceBundler.URIInfo - Class in JSim.data

sourceType - Variable in class JSim.aserver.ASInfo.Build

sourceType - Variable in class JSim.aserver.ASInfo.BuildInfo

splitBlocks() - Method in class JSim.plan.ODEBlock

splitBlocks() - Method in class JSim.plan.PDEBlock

splitBlocks() - Method in class JSim.plan.Plan

square(double) - Method in class JSim.nml.opt.NelderMead

src() - Method in class JSim.plan.SeqEdge

stackTraceString(Throwable) - Static method in class JSim.util.Util

stackTraceString(Throwable) - Static method in exception JSim.util.Xcept

startTime - Variable in class JSim.aserver.ASInfo.Status

startTime - Variable in class JSim.data.ProfileData

stat() - Method in class JSim.plan.VarUsage

StateTool - Class in JSim.plan

StateTool(TModel, Var) - Constructor for class JSim.plan.StateTool

statNames - Static variable in class JSim.plan.XMMLWriter

Status() - Constructor for class JSim.aserver.ASInfo.Status

Status(int) - Constructor for class JSim.aserver.ASInfo.Status

status - Variable in class JSim.data.OptimResults.Info

status - Variable in class JSim.data.OptimResults

stepTol - Variable in class JSim.data.OptimArgs

stopTime - Variable in class JSim.aserver.ASInfo.Status

stopTime - Variable in class JSim.data.ProfileData

storeMode() - Method in interface JSim.aserver.ASModel

str(int) - Method in class JSim.util.StringList

StringList - Class in JSim.util

StringList() - Constructor for class JSim.util.StringList

StringList(int) - Constructor for class JSim.util.StringList

StringList(String) - Constructor for class JSim.util.StringList

StringList(String[]) - Constructor for class JSim.util.StringList

StringList(StringList) - Constructor for class JSim.util.StringList

StringList(StringTokenizer) - Constructor for class JSim.util.StringList

StringList(String, String) - Constructor for class JSim.util.StringList

StringList(String, String, int) - Constructor for class JSim.util.StringList

StringList(int[]) - Constructor for class JSim.util.StringList

stringSet() - Method in class JSim.plan.DomainSet

stringVal() - Method in class JSim.data.NamedVal.Bool

stringVal() - Method in class JSim.data.NamedVal.Int

stringVal(String, String) - Method in class JSim.data.NamedVal.NList

stringVal() - Method in class JSim.data.NamedVal.Real

stringVal() - Method in class JSim.data.NamedVal.Str

stringVal() - Method in class JSim.data.NamedVal

stripComments(String, String, String) - Static method in class JSim.util.Util

stripQuotes(String) - Static method in class JSim.util.Util

StudTDist - Class in JSim.data

StudTDist(int) - Constructor for class JSim.data.StudTDist

subdom() - Method in class JSim.plan.BCBlock

subdom() - Method in class JSim.plan.TExpr

subset - Variable in class JSim.data.Data

Subset() - Constructor for class JSim.data.Data.Subset

Subset(Data.Subset) - Constructor for class JSim.data.Data.Subset

subset - Variable in class JSim.data.DataInfo

suffixes() - Method in class JSim.data.ColumnDataFormat

suffixes() - Method in class JSim.data.CSVDataFormat

suffixes() - Method in class JSim.data.DataFormat

suffixes() - Method in class JSim.data.I4BullDataFormat

suffixes() - Method in class JSim.data.JSMLDataFormat

suffixes() - Method in class JSim.data.LineDataFormat

suffixes() - Method in class JSim.data.MatlabDataFormat

suffixes() - Method in class JSim.data.PrettyDataFormat

suffixes() - Method in class JSim.data.TacDataFormat

suffixes() - Method in class JSim.data.XMLDataFormat

sum() - Method in class JSim.data.RealNData

sum(double, double) - Method in class JSim.data.RealNData

svsort(int, double[]) - Method in class JSim.nml.opt.Praxis

T

t - Variable in class JSim.plan.DETool

t() - Method in class JSim.plan.DETool

t() - Method in class JSim.plan.ImplicitBound

t() - Method in class JSim.plan.ODEBlock

t() - Method in class JSim.plan.PDEBlock

t() - Method in class JSim.plan.SeqBlock

t() - Method in interface JSim.plan.SeqItem

t - Variable in class JSim.plan.SeqUntangler.PullParms

t - Variable in class JSim.plan.StateTool

t() - Method in class JSim.plan.StateTool

t - Variable in class JSim.plan.TEvent

t() - Method in class JSim.plan.TEvent

t() - Method in class JSim.plan.Tool

t() - Method in class JSim.plan.TRelation

t() - Method in class JSim.plan.VarMem

TAC - Static variable in class JSim.data.JSReadable

TacData - Class in JSim.data

TacData() - Constructor for class JSim.data.TacData

TacDataFormat - Class in JSim.data

TacDataFormat() - Constructor for class JSim.data.TacDataFormat

TacDataReader - Class in JSim.data

TacDataReader(TacDataFormat, Reader) - Constructor for class JSim.data.TacDataReader

TacDataWriter - Class in JSim.data

TacDataWriter(TacDataFormat) - Constructor for class JSim.data.TacDataWriter

TAction(TModel, Var, Expr) - Constructor for class JSim.plan.TEvent.TAction

takeDomDeriv(NamedExpr) - Method in class JSim.aserver.ASVar

tanh(double) - Static method in class JSim.util.UtilMath

tcandidates - Variable in class JSim.plan.DETool

TEqn - Class in JSim.plan

TEqn(TModel, Eqn) - Constructor for class JSim.plan.TEqn

termMsg - Variable in class JSim.data.OptimResults.Info

termMsg - Variable in class JSim.data.OptimResults

testFunction(double[], int) - Method in class JSim.nml.opt.Praxis

testRun(int, double[], int, double, double, double, int) - Method in class JSim.nml.opt.Praxis

TEvent - Class in JSim.plan

TEvent(TModel, Event) - Constructor for class JSim.plan.TEvent

TEvent.TAction - Class in JSim.plan

TExpr - Class in JSim.plan

TExpr(TModel, Expr) - Constructor for class JSim.plan.TExpr

TExpr.Map - Class in JSim.plan

text - Variable in class JSim.aserver.ASInfo.Message

text - Variable in class JSim.data.SourceBundler.URIInfo

TEXT_ANTIMONY - Static variable in interface JSim.aserver.ASModel

TEXT_CELLML - Static variable in interface JSim.aserver.ASModel

TEXT_FLATMML - Static variable in interface JSim.aserver.ASModel

TEXT_GRAPHML - Static variable in interface JSim.aserver.ASModel

TEXT_JAVA - Static variable in interface JSim.aserver.ASModel

TEXT_MATHML - Static variable in interface JSim.aserver.ASModel

TEXT_MATLAB - Static variable in interface JSim.aserver.ASModel

TEXT_MML - Static variable in interface JSim.aserver.ASModel

TEXT_NAMES - Static variable in interface JSim.aserver.ASModel

TEXT_PLAN - Static variable in interface JSim.aserver.ASModel

TEXT_SBML - Static variable in interface JSim.aserver.ASModel

TEXT_XML - Static variable in interface JSim.aserver.ASModel

TEXT_XMML - Static variable in interface JSim.aserver.ASModel

TextColumns - Class in JSim.util

TextColumns() - Constructor for class JSim.util.TextColumns

TextColumns(int[]) - Constructor for class JSim.util.TextColumns

TextDataReader - Class in JSim.data

TextDataReader(DataFormat, Reader) - Constructor for class JSim.data.TextDataReader

textVal() - Method in class JSim.data.NamedVal

timeDiffArray(long) - Static method in class JSim.util.Util

timeDiffString(long) - Static method in class JSim.util.Util

timeDiffStringOld(long) - Static method in class JSim.util.Util

timeout() - Method in class JSim.plan.Plan

title() - Method in class JSim.plan.MainBlock

title() - Method in class JSim.plan.MuBlock

title() - Method in class JSim.plan.SeqBlock.Loop

title() - Method in class JSim.plan.SeqBlock

TModel - Class in JSim.plan

TModel(Plan, Model) - Constructor for class JSim.plan.TModel

toBoolean(String) - Static method in class JSim.util.Util

toDouble(String) - Static method in class JSim.util.Util

toFloat(String) - Static method in class JSim.util.Util

toInt(String) - Static method in class JSim.util.Util

token - Variable in class JSim.util.XceptPos

toms731_Beta(boolean) - Method in class JSim.plan.PDE1Factors

toms731_C() - Method in class JSim.plan.PDE1Factors

toms731_Gamma(boolean) - Method in class JSim.plan.PDE1Factors

Toms731_LHB - Static variable in class JSim.data.ProfileData

toms731_Q() - Method in class JSim.plan.PDE1Factors

toms731_R() - Method in class JSim.plan.PDE1Factors

Toms731_RHB - Static variable in class JSim.data.ProfileData

Toms731_State - Static variable in class JSim.data.ProfileData

tool() - Method in class JSim.plan.DECon

tool() - Method in class JSim.plan.ImplicitBound

tool - Variable in class JSim.plan.ReuseTool

Tool - Class in JSim.plan

Tool(TModel) - Constructor for class JSim.plan.Tool

ToolBox - Class in JSim.plan

ToolBox(Plan) - Constructor for class JSim.plan.ToolBox

toolIter() - Method in class JSim.plan.MuCluster

tools() - Method in class JSim.plan.DerivBuilder

tools() - Method in class JSim.plan.MainGraph

tools - Variable in class JSim.plan.ToolBox

toolType() - Method in class JSim.plan.DETool

toolType() - Method in class JSim.plan.DomainTool

toolType() - Method in class JSim.plan.ExprTool

toolType() - Method in class JSim.plan.ExternTool

toolType() - Method in class JSim.plan.ImplicitTool

toolType() - Method in class JSim.plan.ProcTool

toolType() - Method in class JSim.plan.QueryTool

toolType() - Method in class JSim.plan.ReuseTool

toolType() - Method in class JSim.plan.StateTool

toolType() - Method in class JSim.plan.Tool

topItem - Variable in class JSim.plan.SeqMem.CodePoint

torder - Variable in class JSim.plan.DETool

toString() - Method in class JSim.aserver.ASInfo.RunStatus

toString() - Method in class JSim.data.Data.Subset

toString() - Method in class JSim.data.Data

toString() - Method in class JSim.data.DataRange

toString() - Method in class JSim.data.JSReadable

toString() - Method in class JSim.data.NamedVal

toString() - Method in class JSim.data.OptimAlg

toString() - Method in class JSim.data.Plugin

toString() - Method in class JSim.data.SourceBundler.URIInfo

toString() - Method in class JSim.plan.BCBlock

toString() - Method in class JSim.plan.DECon

toString() - Method in class JSim.plan.DETool

toString() - Method in class JSim.plan.DomainSet

toString(String) - Method in class JSim.plan.DomainSet

toString() - Method in class JSim.plan.DomainTool

toString() - Method in class JSim.plan.ExprTool

toString() - Method in class JSim.plan.ExternTool

toString() - Method in class JSim.plan.ImplicitBound

toString() - Method in class JSim.plan.ImplicitBound.VuFactor

toString() - Method in class JSim.plan.ImplicitTool

toString() - Method in class JSim.plan.ODEBlock

toString() - Method in class JSim.plan.PDEBlock

toString() - Method in class JSim.plan.ProcTool

toString() - Method in class JSim.plan.QueryTool

toString() - Method in class JSim.plan.ReuseTool

toString() - Method in class JSim.plan.SeqBlock

toString() - Method in class JSim.plan.SeqEdge

toString() - Method in class JSim.plan.SeqMem.CodePoint

toString() - Method in class JSim.plan.SeqMem.LoopStack

toString() - Method in class JSim.plan.SeqNode

toString() - Method in class JSim.plan.SeqPath

toString() - Method in class JSim.plan.SeqPhase

toString() - Method in class JSim.plan.SeqPullFinder.XEdge

toString() - Method in class JSim.plan.SeqUntangler.PullParms

toString() - Method in class JSim.plan.StateTool

toString() - Method in class JSim.plan.TEqn

toString() - Method in class JSim.plan.TEvent.TAction

toString() - Method in class JSim.plan.TEvent

toString() - Method in class JSim.plan.TExpr

toString() - Method in class JSim.plan.TSubDom

toString() - Method in class JSim.plan.VarGraphML.Edge

toString() - Method in class JSim.plan.VarMem

toString() - Method in class JSim.plan.VarUsage

toString() - Method in class JSim.plan.VarUsages

toString() - Method in class JSim.util.NamedList.Item

toString(String, boolean) - Method in class JSim.util.StringList

toString() - Method in class JSim.util.TextColumns

toString() - Method in class JSim.util.XceptPos

traceNaN() - Method in class JSim.plan.Plan

traceVars() - Method in class JSim.plan.Plan

translateModelText(int, int, String, String) - Method in class JSim.aserver.ASServer

TRelation - Class in JSim.plan

TRelation(TModel, Eqn) - Constructor for class JSim.plan.TRelation

trigger - Variable in class JSim.plan.TEvent

truncate(double, double) - Method in class JSim.nml.opt.NelderMead

truncString(int) - Method in class JSim.data.JSReadable

TSubDom - Class in JSim.plan

TSubDom(TModel, int, Domain) - Constructor for class JSim.plan.TSubDom

TSubDom(TModel, SubDom) - Constructor for class JSim.plan.TSubDom

tValue(double) - Method in class JSim.data.StudTDist

txs - Variable in class JSim.plan.DETool

type() - Method in class JSim.data.Plugin

type - Variable in class JSim.data.ProfileData.Problem

type - Variable in class JSim.data.SourceBundler.URIInfo

typeName(int) - Static method in class JSim.data.ProfileReport

U

uff() - Method in class JSim.data.FFTData

UNBOUND_FZERO - Static variable in class JSim.data.OptimAlg

unbuildRT() - Method in interface JSim.aserver.ASModel

UNIFORM - Static variable in class JSim.data.NoiseMaker

UniqList<E> - Class in JSim.util

UniqList() - Constructor for class JSim.util.UniqList

unit() - Method in class JSim.data.Data

unit - Variable in class JSim.data.DataInfo

units() - Method in interface JSim.aserver.ASModel

units() - Method in class JSim.plan.TModel

unitString() - Method in interface JSim.aserver.ASQuery

unitString() - Method in class JSim.aserver.ASVar

UNKNOWN - Static variable in class JSim.data.JSReadable

UNKNOWN - Static variable in class JSim.data.SourceBundler

unknown(VarUsages, int) - Method in class JSim.plan.ToolBox

untangledGraph() - Method in class JSim.plan.MainBlock

untanglerVersion() - Method in class JSim.plan.Plan

uri - Variable in class JSim.data.SourceBundler.URIInfo

URIInfo(URI) - Constructor for class JSim.data.SourceBundler.URIInfo

url() - Method in class JSim.data.ColumnDataFormat

url() - Method in class JSim.data.CSVDataFormat

url() - Method in class JSim.data.DataFormat

url() - Method in class JSim.data.I4BullDataFormat

url() - Method in class JSim.data.JSMLDataFormat

url() - Method in class JSim.data.JSReadable

url() - Method in class JSim.data.LineDataFormat

url() - Method in class JSim.data.MatlabDataFormat

url() - Method in class JSim.data.PrettyDataFormat

url() - Method in class JSim.data.TacDataFormat

usages() - Method in class JSim.plan.TEqn

usages() - Method in class JSim.plan.TExpr

userDataSetSelect(Component) - Method in interface JSim.gui.plugin.GGraphic.Callbacks

userHome() - Static method in class JSim.util.Util

userModelSelect(Component) - Method in interface JSim.gui.plugin.GGraphic.Callbacks

usesFzero2Solver - Variable in class JSim.aserver.ASModel.Flags

usesODESolver - Variable in class JSim.aserver.ASModel.Flags

usesPDESolver() - Method in class JSim.aserver.ASModel.Flags

usesPDESolvers - Variable in class JSim.aserver.ASModel.Flags

usesRandom - Variable in class JSim.aserver.ASModel.Flags

Util - Class in JSim.util

Util() - Constructor for class JSim.util.Util

UtilIO - Class in JSim.util

UtilIO() - Constructor for class JSim.util.UtilIO

UtilIO.DebugFileOutputStream - Class in JSim.util

UtilMath - Class in JSim.util

UtilMath() - Constructor for class JSim.util.UtilMath

UtilXML - Class in JSim.util

UtilXML() - Constructor for class JSim.util.UtilXML

V

v - Variable in class JSim.plan.DETool

v() - Method in class JSim.plan.DETool

v() - Method in class JSim.plan.ExprTool

v - Variable in class JSim.plan.ExternTool

v() - Method in class JSim.plan.ExternTool

v - Variable in class JSim.plan.StateTool

v() - Method in class JSim.plan.StateTool

v - Variable in class JSim.plan.TEvent.TAction

v() - Method in class JSim.plan.VarUsage

v0s() - Method in class JSim.plan.DECon

vacts - Variable in class JSim.plan.TEvent

validdx(double, double, double, double) - Method in class JSim.nml.opt.Sensop

var(Var) - Method in class JSim.plan.TModel

var(String) - Method in class JSim.plan.TModel

VarGraphML - Class in JSim.plan

VarGraphML(PlanGraphML) - Constructor for class JSim.plan.VarGraphML

VarGraphML.Edge - Class in JSim.plan

variant() - Method in class JSim.data.Plugin

variesWith(Domain, Expr) - Method in class JSim.plan.TExpr

varList() - Method in class JSim.plan.VarUsages

VarMem - Class in JSim.plan

VarMem(boolean) - Constructor for class JSim.plan.VarMem

VarMem(boolean, Var) - Constructor for class JSim.plan.VarMem

VarMem(boolean, ArrayList<Var>) - Constructor for class JSim.plan.VarMem

varReqDoms() - Method in class JSim.plan.MainBlock

varReqDoms() - Method in class JSim.plan.SeqMem

vars() - Method in class JSim.plan.VarMem

VarUsage - Class in JSim.plan

VarUsage(TModel, Var) - Constructor for class JSim.plan.VarUsage

VarUsage(TSubDom, Var) - Constructor for class JSim.plan.VarUsage

VarUsage(TModel, Var, int, Domain) - Constructor for class JSim.plan.VarUsage

VarUsage(TModel, Var, int[]) - Constructor for class JSim.plan.VarUsage

VarUsages - Class in JSim.plan

VarUsages(TModel) - Constructor for class JSim.plan.VarUsages

VarUsages(VarUsage) - Constructor for class JSim.plan.VarUsages

VarUsages(VarUsages) - Constructor for class JSim.plan.VarUsages

VarUsages(TModel, Expr[]) - Constructor for class JSim.plan.VarUsages

VarUsages(TModel, Expr) - Constructor for class JSim.plan.VarUsages

velCoeff - Variable in class JSim.data.OptimArgs

VELDHUIZEN_INTERP - Static variable in class JSim.data.RealNData

verbose - Static variable in class JSim.util.Util

verbose(String) - Static method in class JSim.util.Util

VERSION - Static variable in class JSim.plan.XMMLWriter

version() - Static method in class JSim.util.Util

vexpr - Variable in class JSim.plan.TEvent.TAction

vmus() - Method in class JSim.plan.MuBlock

vreqs() - Method in class JSim.plan.DECon

vreqs() - Method in class JSim.plan.ImplicitBound

vreqs() - Method in class JSim.plan.SeqBlock

vreqs() - Method in interface JSim.plan.SeqItem

vreqs - Variable in class JSim.plan.TEvent

vreqs() - Method in class JSim.plan.TEvent

vreqs - Variable in class JSim.plan.Tool

vreqs() - Method in class JSim.plan.Tool

vreqs() - Method in class JSim.plan.TRelation

vreqs() - Method in class JSim.plan.VarMem

vset() - Method in class JSim.plan.VarUsages

vsols - Variable in class JSim.plan.Tool

vstate() - Method in class JSim.plan.MuBlock

vtmax - Variable in class JSim.plan.DETool

vtmax(Var, Domain) - Method in class JSim.plan.VarUsages

vu - Variable in class JSim.plan.ExprTool

vu - Variable in class JSim.plan.ImplicitBound.VuFactor

vuEvents(VarUsage) - Method in class JSim.plan.MainGraph

VuFactor(VarUsage, RealConst) - Constructor for class JSim.plan.ImplicitBound.VuFactor

vus() - Method in class JSim.plan.DECon

vus - Variable in class JSim.plan.ImplicitPool.PoolEqn

vuTool(VarUsage) - Method in class JSim.plan.MainGraph

vuTools() - Method in class JSim.plan.MainBlock

vuxs - Variable in class JSim.plan.ImplicitPool.PoolEqn

W

WARN - Static variable in class JSim.plan.Logger

warn(String) - Method in class JSim.plan.Logger

warning - Variable in class JSim.aserver.ASInfo.Message

warning() - Method in class JSim.data.DataWriter

width() - Method in class JSim.data.CSVDataWriter.Block

width() - Method in class JSim.data.CSVDataWriter.Block0

width() - Method in class JSim.data.CSVDataWriter.Block1

width() - Method in class JSim.data.CSVDataWriter.Block2

width() - Method in class JSim.data.CSVDataWriter.BlockN

width() - Method in class JSim.data.CSVDataWriter

width() - Method in class JSim.data.PrettyDataWriter.Block

width() - Method in class JSim.data.PrettyDataWriter.Block0

width() - Method in class JSim.data.PrettyDataWriter.Block1

width() - Method in class JSim.data.PrettyDataWriter.Block2

width() - Method in class JSim.data.PrettyDataWriter.BlockN

width() - Method in class JSim.data.PrettyDataWriter

Worker(int) - Constructor for class JSim.util.MPDispatch.Worker

wrap(String, int) - Static method in class JSim.util.Util

wrap(Throwable) - Static method in exception JSim.util.Xcept

wrapped - Variable in exception JSim.util.Xcept

write(int, int) - Method in class JSim.data.CSVDataWriter.Block

write(int, int) - Method in class JSim.data.CSVDataWriter.Block0

write(int, int) - Method in class JSim.data.CSVDataWriter.Block1

write(int, int) - Method in class JSim.data.CSVDataWriter.Block2

write(int, int) - Method in class JSim.data.CSVDataWriter.BlockN

write(int, int) - Method in class JSim.data.PrettyDataWriter.Block

write(int, int) - Method in class JSim.data.PrettyDataWriter.Block0

write(int, int) - Method in class JSim.data.PrettyDataWriter.Block1

write(int, int) - Method in class JSim.data.PrettyDataWriter.Block2

write(int, int) - Method in class JSim.data.PrettyDataWriter.BlockN

write(Document, File) - Method in class JSim.data.XMLWriter

write(Document, OutputStream) - Method in class JSim.data.XMLWriter

write(Element, OutputStream) - Method in class JSim.data.XMLWriter

write(Document, Writer) - Method in class JSim.data.XMLWriter

write(SeqGraph, PrintStream) - Static method in class JSim.plan.SeqIO

write(SeqGraph, PrintWriter) - Static method in class JSim.plan.SeqIO

write(SeqGraph, SeqPhase, PrintWriter) - Static method in class JSim.plan.SeqIO

write(PrintStream) - Method in class JSim.plan.XMMLWriter

write(byte[]) - Method in class JSim.util.NullOutputStream

write(byte[], int, int) - Method in class JSim.util.NullOutputStream

write(byte) - Method in class JSim.util.NullOutputStream

write(int) - Method in class JSim.util.NullOutputStream

write(byte[]) - Method in class JSim.util.UtilIO.DebugFileOutputStream

write(byte[], int, int) - Method in class JSim.util.UtilIO.DebugFileOutputStream

write(byte) - Method in class JSim.util.UtilIO.DebugFileOutputStream

writeBytes(Data.List) - Method in class JSim.data.DataWriter

writeBytes(File, byte[]) - Static method in class JSim.util.UtilIO

writeData(Writer, Data.List) - Method in class JSim.data.ColumnDataWriter

writeData(Writer, Data.List) - Method in class JSim.data.CSVDataWriter

writeData(Writer, int, int) - Method in class JSim.data.CSVDataWriter

writeData(Writer, int, int) - Method in class JSim.data.DataWriter.Blocked

writeData(OutputStream, int, int) - Method in class JSim.data.DataWriter.Blocked

writeData(Writer, Data.List) - Method in class JSim.data.DataWriter

writeData(OutputStream, Data.List) - Method in class JSim.data.DataWriter

writeData(Writer, Data.List) - Method in class JSim.data.I4BullDataWriter

writeData(Writer, Data.List) - Method in class JSim.data.LineDataWriter

writeData(Writer, Data.List) - Method in class JSim.data.MatlabDataWriter

writeData(Writer, Data.List) - Method in class JSim.data.PrettyDataWriter

writeData(Writer, int, int) - Method in class JSim.data.PrettyDataWriter

writeData(Writer, Data.List) - Method in class JSim.data.TacDataWriter

writeData(Writer, Data.List) - Method in class JSim.data.XMLDataWriter

writeFile(File, Data.List) - Method in class JSim.data.DataWriter

writeNode(Node, Writer, String) - Method in class JSim.data.GraphMLWriter

writeNodes(SeqGraph, PrintWriter) - Static method in class JSim.plan.SeqIO

writeNodes(SeqGraph, PrintStream) - Static method in class JSim.plan.SeqIO

writePath - Variable in class JSim.aserver.ASInfo.Sandbox

writeString(Document, String) - Method in class JSim.data.GraphMLWriter

writeString(Document) - Method in class JSim.data.XMLWriter

writeString() - Method in class JSim.plan.XMMLWriter

writeText(Data.List) - Method in class JSim.data.DataWriter

writeText(File, String) - Static method in class JSim.util.UtilIO

X

x - Variable in class JSim.plan.DomainTool

x() - Method in class JSim.plan.DomainTool

x - Variable in class JSim.plan.ReuseTool

x() - Method in class JSim.plan.SeqBlock.Loop

x() - Method in class JSim.plan.SeqPhase

Xcept - Exception in JSim.util

Xcept(String) - Constructor for exception JSim.util.Xcept

Xcept(String, XceptPos) - Constructor for exception JSim.util.Xcept

Xcept(DiagInfo, String) - Constructor for exception JSim.util.Xcept

Xcept(DiagInfo, String, XceptPos) - Constructor for exception JSim.util.Xcept

Xcept(DiagInfo, DiagInfo, String) - Constructor for exception JSim.util.Xcept

Xcept(Throwable, String) - Constructor for exception JSim.util.Xcept

Xcept(Throwable) - Constructor for exception JSim.util.Xcept

XceptPos - Class in JSim.util

XceptPos(String, int, int, String) - Constructor for class JSim.util.XceptPos

XEdge(SeqNode, SeqNode, String) - Constructor for class JSim.plan.SeqPullFinder.XEdge

XEXPR - Static variable in class JSim.plan.TExpr

XEXPR - Static variable in class JSim.plan.Tool

XEXPR - Static variable in class JSim.plan.VarUsage

xistep - Variable in class JSim.data.OptimArgs

xmax - Variable in class JSim.data.OptimArgs

xmin - Variable in class JSim.data.OptimArgs

XML - Static variable in class JSim.data.JSReadable

XML - Static variable in class JSim.data.SourceBundler

XMLDataFormat - Class in JSim.data

XMLDataFormat() - Constructor for class JSim.data.XMLDataFormat

XMLDataReader - Class in JSim.data

XMLDataReader(XMLDataFormat, Reader) - Constructor for class JSim.data.XMLDataReader

XMLDataWriter - Class in JSim.data

XMLDataWriter(XMLDataFormat) - Constructor for class JSim.data.XMLDataWriter

XMLHDR - Static variable in class JSim.data.XMLWriter

XMLWriter - Class in JSim.data

XMLWriter() - Constructor for class JSim.data.XMLWriter

XMMLWriter - Class in JSim.plan

XMMLWriter(Plan) - Constructor for class JSim.plan.XMMLWriter

xname - Variable in class JSim.data.OptimArgs

xs - Variable in class JSim.plan.DETool

xs() - Method in class JSim.plan.PDEBlock

xsect(DomainSet) - Method in class JSim.plan.DomainSet

xsect(VarUsages) - Method in class JSim.plan.VarUsages

xstart - Variable in class JSim.data.OptimArgs

Z

zeroExpr() - Method in class JSim.plan.TExpr

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