2012 MSM CONSORTIUM MEETING Abstracts

Return to: 2012 MSM CONSORTIUM MEETING

Poster Format: Posters should fit on a 4’x6’ board (height x length); board numbers and push pins will be provided at the meeting.

Number Name Email Abstract Title
Keynote
Martin Kohn marty.kohn@us.ibm.com Watson, Cognitive Computing and Healthcare
1
Gary An docgca@gmail.com The Computational Modeling Assistant: semi-automating the generation and implementation of dynamic computational models.
2
Gary An, Scott Christley, Gary Nieman, Yoram Vodovotz docgca@gmail.com Lung Multi-scale Model for the evaluation of the pathophysiology of Ventilator Induced Lung Injury during the treatment of Acute Respiratory Distress Syndrome.
3
Yoram Vodovotz, Gary Nieman, Scott Christley, Gary An vodovotzy@upmc.edu Multiscale Modeling of Ventilator Effects on Lung Inflammation and the propagation to Multiple Organ Dysfunction Syndrome
4
Dan Beard beardda@gmail.com The Virtual Physiological Rat Project
5
Georgiy Bobashev bobashev@rti.org Multiscale modeling of drug use: from neurobiology to behavior and back.
6
David Christini dchristi@med.cornell.edu Atrial myocyte model parameter identification via dynamic electrophysiology protocols and automated search algorithms
7
Roman Voronov, Timothy Stalker, Lawrence Brass, Scott Diamond rvoronov@seas.upenn.edu Molecular Transport within Thrombi Based on In-Vivo 3D Confocal Imaging with Single Platelet Resolution
8
Scott Diamond, Thomas Colace, Ryan Muthard, John Welsh, Timothy Stalker, Skip Brass sld@seas.upenn.edu Chemical, Pressure, and Shear Rate Gradients in Multiscale Blood Systems Biology
9
David Eckmann, R.Radhakrishnan, P.S. Ayyaswamy David.Eckmann@uphs.upenn.edu Multiscale Modeling and optimization of nanocarrier targeting in drug delivery
10
Daniel Einstein, Kuprat, Kabilan, Corley daniel.einstein@pnnl.gov Enhanced Nonlinear Krylov Accelerator for Stable Bi-Directional Multiscale Coupling: Application to Pulmonary Airflow
11
Mounya Elhilali mounya@jhu.edu Multiscale Processing of Complex Acoustic Scenes
12
Ben Ellis, Shawn Reese, Jeffrey Weiss Ben.Ellis@utah.edu Micromechanical Model of a Collagen-Based Tendon Surrogate
13
Ahmet Erdemir erdemira@ccf.org Predicting Cell Deformations from Body Level Mechanical Loads - Tackling the Hurdles

Abstract Poster

14
Stacey Finley, Sasha Popel sdfinley@jhu.edu Multiscale molecular-detailed pharmacokinetic and pharmacodynamic model predicts response to anti-VEGF therapies in cancer
15
Ronan Fleming*, Yuekai Sun, Ines Thiele, Michael Saunders ronan.mt.fleming@gmail.com A globally convergent algorithm for computing non-equilibrium steady state concentrations in genome-scale biochemical networks
16
Yukei Sun*, Ronan Fleming, Ines Thiele, Michael Saunders ronan.mt.fleming@gmail.com Flux balance analysis of multi-scale biochemical reaction networks
17
Joann Flynn, Denise Kirschner, Jennifer Linderman kirschne@umich.edu A systems biology approach to understanding antigen presentation capacity in a lymph node
18
Joann Flynn, Denise Kirschner, Jennifer Linderman kirschne@umich.edu Multi-scale analysis of TNF-regulated immune response to Mycobacterium tuberculosis infection
19
Joann Flynn, Denise Kirschner, Jennifer Linderman kirschne@umich.edu Multi-scale modeling reveals the influence of opposing dynamics of TNF and

IL-10 in Mycobacterium tuberculosis infection

20
Lou Gross gross@NIMBioS.org NIMBioS: Examples of Research Efforts at the Interface of Mathematics and the Life Sciences involving Multiple Scales
21
Jay Humphrey, J.S. Wilson jay.humphrey@yale.edu Multi-Resolution, Multi-Scale Model of Abdominal Aortic Aneurysm Enlargement
22
Tony Hunt a.hunt@ucsf.edu Falsification/Validation of Enzyme Induction Mechanisms within a Validated, Multiscale Liver Model Download poster here Media:Hunt's_MSM_Enz_Ind_Poster.pdf
23
Tony Hunt a.hunt@ucsf.edu Eight reasons why relational grounding facilitates developing scientifically useful multiscale models Download poster here Media:Hunt's_MSM_Rel_Gnd_Poster.pdf
24
Mike King, Nipa Mody, Weiwei Wang mike.king@cornell.edu Multiscale model of platelet translocation and collision
25
Ching-Long Lin ching@engineering.uiowa.edu A Numerical Study of Structure and Function Relationships in Normal and Severe Asthmatic Lungs
26
Yaling Liu yal310@Lehigh.EDU Multiscale Particulate and Continuum Model for Nanoparticle Targeted Delivery
27
Wing Kam Liu w-liu@northwestern.edu IMFEM Framework for Drug Delivery in Microvasculature
28
Andrew D McCulloch amcculloch@eng.ucsd.edu Multi-Scale Systems Models of Murine Heart Failure
29
Sriram Neelamegham and Gang Liu neel@buffalo.edu Application of systems biology to construct and simulate glycosylation reaction networks
30
James Moore jmoorejr@bme.tamu.edu LUMPED-PARAMETER MODEL OF A CHAIN OF LYMPHANGIONS IN SERIES – A PARAMETER SENSITIVITY STUDY
31
Robert McDougal, Michael L Hines, William W Lytton robert.mcdougal@yale.edu Reaction-Diffusion Modeling in the NEURON Simulator
32
Sam Neymotin, Yosef Skolnick, Robert McDougal, Markus Hilscher, Thiago Moulin, William Lytton samuel.neymotin@yale.edu Simulated relations of molecular, cellular, and neuronal network dynamics in a PFC network Abstract

Poster

33
Linda Petzold petzold@cs.ucsb.edu Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems
34
Vipul Bhargava et al.   Lineage Segregation in Embryonic Stem Cells: A Novel Transcriptomics Method for Identifying the Parts Lists
35
Herbert Sauro, Stanley Gu, Mats T Karlsson hsauro@u.washington.edu Advanced SubCellular Simulation Capabilities with the Systems Biology Workbench
36
Howard Salis salis@psu.edu Biophysical Models of Translation, Translational Coupling, and Small RNA Regulation to Predict and Control Protein Expression
37
Edward Sander, Victor Barocas edward-sander@uiowa.edu ‎‎Multiscale Computational Simulations of Cell Compaction in Collagen Gels
38
Abbas Shirinifard, Maciej Swat, James Glazier ashirini@indiana.edu A Predictive, Mechanism Based, Multicell Model of Pathological Vascularization in the Retinas
39
Jim Sluka, Alin Cosmanescu, Maciek Swat, James Glazier jsluka@indiana.edu From Macro to Micro Dosimetry, Pharmacology and Toxicity: A multiscale modeling framework of Xenobiotics using open source tools.Poster available at: https://comptox.indiana.edu/tox/Welcome?action=AttachFile&do=view&target=J_Sluka__IMAG-MSM_Oct_2012.pptx
40
Dalin Tang dtang@WPI.EDU An Interdisciplinary Multiscale Modeling Approach to Develop Right Ventricle Pulmonary Valve Replacement Surgical Procedures with a Contracting Band to

Improve Ventricle Ejection Fraction

41
Ines Thiele, Ronan Fleming ines.thiele@gmail.com Multiscale Molecular Systems Biology: Reconstruction and Model

Optimization

42
Maurizio Tomaiuolo mauriziotml@gmail.com Modeling thrombus formation in vivo.
43
H.S.Udaykumar, J. S. Marshall, S. Vigmostad and K. B. Chandran hs-kumar@uiowa.edu Multi-scale modeling of blood flow in cardiovascular prosthetic devices
44
Jacob Barhak jacob.barhak@gmail.com The Reference Model for Chronic Disease Progression - Poster
45
Kevin Shelburne kevin.shelburne@comcast.net Single-Framework Models for Muscle-Driven Simulation Using Finite Element Modeling
46
Xiaobo Zhou, Jing Su, Dan Wu, Jianguo Wen, Le Zhang, Jeff Chang, Youli Zu XZhou@tmhs.org Multiscale Modeling of Cancer Stem Cell Niche in Myeloma Development
47
George Moody george@MIT.EDU Sharing Data and Software on PhysioNet
*
Don Bolser, Teresa Pitts   Paroxysmal coughing: in vivo investigations and model simulations
*
JoAnne Flynn, Jennifer Linderman, Denise Kirschner   Predicting immune responses that are protective against tuberculosis
*
Lederer, Jafri, Winslow   Calcium Entrained Arrhythmias
*
Andrew McCulloch   Multi-Scale Systems Models of Murine Heart Failure
*
Raimond Winslow   Redox Modification of the Arrhythmic Substrate in Heart Failure
*
Scott Diamond   Chemical, Pressure, and Shear Rate Gradients in Multiscale Blood Systems Biology
*
Shu Chien   Systems Biology Analyses for Hemodynamic Regulation of Vascular Homeostasis
*
Sriram Neelamegham   Glycosyltransferases regulating leukocyte-endothelial cell adhesion

(*) Denotes NHLBI Systems Biology Oral Presentations

Table sorting checkbox
Off