JSim version 2.03 and above require the main libraries and java bindings from libSBML, the utility program sbtranslate from the Antimony package, and sbml2matlab program (JSim v2.07 and above) for full functionality. This document describes how to obtain what you need from those packages.
This page is for the current JSim version 2.0 and higher. Click here for the earlier JSim 1.6 version.
This document describes coding standards for JSim Java source code. It is intended for those contributing Java source code to the JSim CVS archive. JSim is a large program (currently about 80,000 lines), so ensuring some uniformity of appearance is very helpful to those who must read and understand the code.
This page is for the current JSim version 2.0 and higher. Click here for the earlier JSim 1.6 version.
This page is a working document for JSim internals developers working on JSim multi-processing (MP) support:
Overview
This page is for the current JSim version 2.0 and higher. Click here for the earlier JSim 1.6 version.
This page is for the current JSim version 2.0 and higher. Click here for the earlier JSim 1.6 version.
This specification is preliminary and subject to change. Last revised: 06 Sep 2006.
The RealNData.realVal(double[] xvals) method implements N-dimensional interpolation based on grid values (not grid array indexes). Various interpolation algorithms may be implemented, subject to the following guidelines.
This page is for the current JSim version 2.0 and higher. Click here for the earlier JSim 1.6 version.
JSim software is developed at the University of Washington by the National Simulation Resource, James B. Bassingthwaighte, director, and is supported by NIH/NIBIB grant EB01973-22.
This page is for the older JSim version 1.6. Click here for the latest JSim 2.0 version.
JSim software is developed at the University of Washington by the National Simulation Resource, James B. Bassingthwaighte, director, and is supported by NIH/NIBIB grant EB01973-22.
See one of the following links:
Comments or Questions?
This page is for the current JSim version 2.0 and higher. Click here for the earlier JSim 1.6 version.
CellML is an XML based open standard for exchange of computer based mathematical models. JSim currently support importing most CellML models. Extended import and export support is currently under development.
Prerequisites:
Recent:
