NSR Tutorials
Tutorials are works in progress. Each tutorial will provide an overview of the topic and a beginning guide to a set of models which can be run on the website or downloaded for running on one's own computer under JSim (under Windows, Macintosh or Linux). The intention of the tutorials is to provide elementary material on a given topic, and by way of example, to use the primitive modules as components within a modest number of increasingly complex forms. Any suggestions will be gratefully received. Each tutorial links to a set of model Wiki pages.
JSim Model Standards and NSR Physiome General Modeling Guidelines
These standards and guidelines are to be used towards making models, and the science behind them, reproducible. Please see the following slideshow that was given as an introduction to 'Reproducibilty in Modeling' at the Fall, 2013 BMES meeting:
Good Modeling Standards
Proposed checklists for assisting in reproducible modeling and data analysis.
Checklists:
Defining standards for good modeling practice
Classes of models might be defined as Class 1: lists of observed objects, categorized into groups suspected of being related, Class 2: linkage maps of proposed relationships, sometimes with cause-and-effect directionality, Class 3: kinetic descriptions of relationships between variables developed enough that model solutions fit observed time course behavior, and Class 4: biophysically based models that appear to provide an "explanation", demonstrating both good fitting of model solutions to data, and bei
NSR Tutorials
Tutorials are works in progress. Each tutorial will provide an overview of the topic and a beginning guide to a set of models which can be run on the website or downloaded for running on one's own computer under JSim (under Windows, Macintosh or Linux). The intention of the tutorials is to provide elementary material on a given topic, and by way of example, to use the primitive modules as components within a modest number of increasingly complex forms. Any suggestions will be gratefully received. Each tutorial links to a set of model Wiki pages.
Find Models
Search for NSR Physiome models currently available on this website.
Browse NSR Physiome models
Model development and archiving support at https://www.imagwiki.nibib.nih.gov/physiome provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lu
Online Demonstrations
NOTE: XSIM is NO Longer supported!
XSIM Interface Tour
We have provided a tutorial and tour through XSIM that demonstrates many of its capabilities (video clips are provided for MS Windows users; an X server is not required.