JSim Biomodels Page | Interagency Modeling and Analysis Group

This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.

Notes:

Models on this page require JSim version 2.03 or higher.
JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
Updated curated EMBL-EBI Biomodels on 24, April 2019.

Return to complete JSim model archives.

Currently available curated models

Number of models in this archive: 710
Number of models currently runnable under JSim: 643
Number of runnable models containing unsupported events: 130

Displaying 181 - 200 of 710

BIO0181 : Sriram2007 CellCycle

BIOMD0000000181: [View MML]

BIO0182 : Neves2008 - Role of cell shape and size in controlling intracellular signalling

BIOMD0000000182: [View MML]

BIO0183 : Stefan2008 - calmodulin allostery

BIOMD0000000183: [View MML]

BIO0184 : Lavrentovich2008 Ca Oscillations

BIOMD0000000184: [View MML]

BIO0185 : Locke2008 Circadian Clock

BIOMD0000000185: [View MML]

BIO0186 : Ibrahim2008 - Mitotic Spindle Assembly Checkpoint - Dissociation variant

BIOMD0000000186: [View MML]

BIO0187 : Ibrahim2008 - Mitotic Spindle Assembly Checkpoint - Convey variant

BIOMD0000000187: [View MML]

BIO0188 : Proctor2008 - p53/Mdm2 circuit - p53 stabilisation by ATM

BIOMD0000000188: [View MML]

BIO0189 : Proctor2008 - p53/Mdm2 circuit - p53 stablisation by p14ARF

BIOMD0000000189: [View MML]

BIO0190 : Rodriguez-Caso2006 Polyamine Metabolism

BIOMD0000000190: [View MML]

BIO0191 : Montañez2008 Arginine catabolism

BIOMD0000000191: [View MML]

BIO0192 : Görlich2003 RanGTP gradient

BIOMD0000000192: [View MML]

BIO0193 : Ibrahim2008 MCC assembly model KDM

BIOMD0000000193: [View MML]

BIO0194 : Ibrahim2008 Cdc20 Sequestring Template Model

BIOMD0000000194: [View MML]

BIO0195 : Tyson2001 Cell Cycle Regulation

BIOMD0000000195: [View MML]

BIO0196 : Srividhya2006 CellCycle

BIOMD0000000196: [View MML]

BIO0197 : Bartholome2007 MDCKII

BIOMD0000000197: [View MML]

BIO0198 : Stone1996 - activation of soluble guanylate cyclase by nitric oxide

BIOMD0000000198: [JSim version not yet available]

BIO0199 : Santolini2001 nNOS Mechanism Regulation

BIOMD0000000199: [View MML]

BIO0200 : Bray1995 chemotaxis receptorlinkedcomplex

BIOMD0000000200: [View MML]