Model number

MID data curves fit to stirred tank model - compare 1 tank versus 15 serial tanks. Figure 15 of "Tracers in Physiological Systems Modeling".


SIMVOL-two-organ, recirculating system with shunt. Model includes a three compartment organ tissue exchange and a three region axially-distributed blood tissue exchange. Parameter set illustrates stirred tank model fit to Multiple Indicator Dilution (MID) data for N =1 and 15 serial stirred tanks. To reproduce figure 15, make sure parameter set Fig15_Top.ALLN15.par is loaded (or Fig15_Bottom.ALLN1.par for 1 stirred tank). Next go to loops page and run loops with parameter and values listed and checked.

For more detailed information, see:

Return to:
"Tracers in physiological systems modeling" home page.


The equations for this model may be viewed by running the JSim model applet and clicking on the Source tab at the bottom left of JSim's Run Time graphical user interface. The equations are written in JSim's Mathematical Modeling Language (MML). See the Introduction to MML and the MML Reference Manual. Additional documentation for MML can be found by using the search option at the Physiome home page.

Download JSim model project file
  Anderson JC and Bassingthwaighte JB: "Tracers in physiological systems modeling". 
  In: "Mathematical Modeling in Nutrition and Agriculture". Proc 9th International Conf on Mathematical 
  Modeling in Nutrition, Roanoke, VA, August 14-17, 2006, edited by Mark D. Hanigan JN and Casey L Marsteller. 
  Virginia Polytechnic Institute and State University, Blacksburg, VA 2007, pp 125-159. 
Key terms
metabolic physiologic modeling
lumped compartmental versus spatially distributed systems
capillary-tissue exchange
membrane transporters
enzyme reactions
steady state versus transient states

Please cite in any publication for which this software is used and send one reprint to the address given below:
The National Simulation Resource, Director J. B. Bassingthwaighte, Department of Bioengineering, University of Washington, Seattle WA 98195-5061.

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.