What is being modeled?
Cellular trajectories, transition probabilities, energy landscape.
Description & purpose of resource
scEpath is an approach that calculates energy landscapes and probabilistic directed graphs in order to reconstruct developmental trajectories.
1 - 103 s
weeks to months
This resource is currently
mature and useful in ongoing research
Has this resource been validated?
Link to Resource Credibility Assessment
Can this resource be associated with other resources? (e.g.: modular models, linked tools and platforms)
Key publications (e.g. describing or using resource)
Suoqin Jin, Adam L. MacLean, Tao Peng, Qing Nie. scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data. Bioinformatics. 2018 Jun 15;34(12):2077-2086. doi: 10.1093/bioinformatics/bty058.
DOI link to publication describing this resource
Link to resource
PI contact information
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