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SoptSc: Cell lineage and communication network inference via optimization for single-cell transcriptomics.

What is being modeled?
Cellular trajectories, cell-cell communications
Description & purpose of resource

Implementation of pattern recognition algorithms and visualization tools for similarity and communication between cells and populations of cells.

Spatial scales
Temporal scales
1 - 103 s
weeks to months
This resource is currently
mature and useful in ongoing research
Has this resource been validated?
Can this resource be associated with other resources? (e.g.: modular models, linked tools and platforms)
Key publications (e.g. describing or using resource)

Shuxiong Wang, Matthew Karikomi, Adam L MacLean, Qing Nie. Cell lineage and communication network inference via optimization for single-cell transcriptomics. Nucleic Acids Research, Volume 47, Issue 11, 20 June 2019, Page e66. DOI: 10.1093/nar/gkz204.

Qing Nie
PI contact information
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