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JSim JWS Models Page

This page allows users to run models from the JWS Online Models Database under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.

Note: Models on this page require JSim version 1.6.84 or above.

Return to complete JSim model archives.

Currently available models

  • Number of models in this archive: 68
  • Number of models currently runnable under JSim: 63

Displaying 21 - 40 of 68

eissing : Bistability Analyses of a caspase activation model for receptor-induced apoptosis.
feedbackmoi : None
fuentes : Kinetics of intra- and intermolecular zymogen activation with formation of an enzyme-zymogen complex
galazzo1 : Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae
gomes : Protein glycation in Saccharomyces cerevisiae. Argpyrimidine formation and methylglyoxal catabolism
heinrich : Heinrich model
holzhutter : The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
hornberg : Principles behind the multifarious control of signal transduction ERK phosphorylation and kinase/phosphatase control
ihekwaba : Sensitivity analysis of parameters controlling
jamshidi : Metabolic Dynamics in the Human Red Cell.
  • jamshidi: [JSim version not yet available]
kholodenko : Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor
kim : Robustness analysis of biochemical network models
kintuta : None
kintutb : None
kintutc : None
kintutd : None
kofahl : Modelling the dynamics of the yeast pheromone pathway.
koster : Kinetics of Histone Gene Expression during Early Development of Xenopus laevis.
  • koster: [JSim version not yet available]
lambeth : A Computational Model for Glycogenolysis in Skeletal Muscle
laub : A Molecular Network That Produces Spontaneous Oscillations in Excitable Cells of Dictyostelium