JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 481 - 500 of 710
BIO0481 : Stötzel2012 - Bovine estrous cycle, synchronization with prostaglandin F2α
BIO0482 : Noguchi2013 - Insulin dependent glucose metabolism
BIO0483 : Cao2008 - Network of a toggle switch
BIO0484 : Cao2013 - Application of ABSIS method in birth-death process
BIO0485 : Cao2013 - Application of ABSIS method in the bistable Schlögl model
BIO0486 : Cao2013 - Application of ABSIS method in the reversible isomerization model
BIO0487 : Cao2013 - Application of ABSIS in the the enzymatic futile cycle
BIO0488 : Proctor2013 - Effect of Aβ immunisation in Alzheimer's disease (deterministic version)
BIO0489 : Sharp2013 - Lipopolysaccharide induced NFkB activation
BIO0490 : Demin2013 - PKPD behaviour - 5-Lipoxygenase inhibitors
BIO0491 : Pathak2013 - MAPK activation in response to various abiotic stresses
BIO0492 : Pathak2013 - MAPK activation in response to various biotic stresses
BIO0493 : Schittler2010 - Cell fate of progenitor cells, osteoblasts or chondrocytes
BIO0494 : Roblitz2013 - Menstrual Cycle following GnRH analogue administration
BIO0495 : Sen2013 - Phospholipid Synthesis in P.knowlesi
BIO0496 : Stanford2013 - Kinetic model of yeast metabolic network (standard)
- BIOMD0000000496: [JSim version not yet available]
BIO0497 : Stanford2013 - Kinetic model of yeast metabolic network (regulation)
- BIOMD0000000497: [JSim version not yet available]
BIO0498 : Mitchell2013 - Liver Iron Metabolism
BIO0499 : Vizan2013 - TGF pathway long term signaling
- BIOMD0000000499: [JSim version not yet available]
BIO0500 : Begitt2014 - STAT1 cooperative DNA binding - single GAS polymer model