JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 501 - 520 of 710
BIO0501 : Begitt2014 - STAT1 cooperative DNA binding - double GAS polymer model
BIO0502 : Messiha2013 - Pentose phosphate pathway model
BIO0503 : Messiha2013 - combined glycolysis and pentose phosphate pathway model
BIO0504 : Proctor2013 - Cartilage breakdown, interventions to reduce collagen release
BIO0505 : vanEunen2013 - Network dynamics of fatty acid β-oxidation (steady-state model)
BIO0506 : vanEunen2013 - Network dynamics of fatty acid β-oxidation (time-course model)
BIO0507 : Gardner2000 - genetic toggle switch in E.coli substanceUnits=substance timeUnits=time volumeUnits=volume
BIO0508 : Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release
BIO0509 : Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release
BIO0510 : Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL C (with glucosomal ribokinase)
BIO0511 : Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter)
BIO0512 : Benson2014 - FAAH inhibitors for the treatment of osteoarthritic pain
BIO0513 : Kerkhoven2013 - Glycolysis in T.brucei - MODEL A
BIO0514 : Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL B
BIO0515 : Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL C in fructose medium (with glucosomal ribokinase)
BIO0516 : Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D in fructose medium (with ATP:ADP antiporter)
BIO0517 : Smallbone2013 - Colon Crypt cycle - Version 3
BIO0518 : Smallbone2013 - Colon Crypt cycle - Version 2
BIO0519 : Smallbone2013 - Colon Crypt cycle - Version 1
BIO0520 : Smallbone2013 - Colon Crypt cycle - Version 0