JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 521 - 540 of 710
BIO0521 : Ribba2012 - Low-grade gliomas, tumour growth inhibition model
BIO0522 : Muraro2014 - Vascular patterning in Arabidopsis roots
BIO0523 : Kallenberger2014 - CD95L induced apoptosis initiated by caspase-8, CD95 HeLa cells (cis/trans variant)
BIO0524 : Kallenberger2014 - CD95L induced apoptosis initiated by caspase-8, wild-type HeLa cells (cis/trans variant)
BIO0525 : Kallenberger2014 - CD95L induced apoptosis initiated by caspase-8, CD95 HeLa cells (cis/trans-cis/trans variant)
BIO0526 : Kallenberger2014 - CD95L induced apoptosis initiated by caspase-8, wild-type HeLa cells (cis/trans-cis/trans variant)
BIO0527 : Kaiser2014 - Salmonella persistence after ciprofloxacin treatment
BIO0528 : Fribourg2014 - Dynamics of viral antagonism and innate immune response (H1N1 influenza A virus - Cal/09)
BIO0529 : Fribourg2014 - Dynamics of viral antagonism and innate immune response (H1N1 influenza A virus - NC/99)
BIO0530 : Schmitz2014 - RNA triplex formation
BIO0531 : Crespo2012 - Kinetics of Amyloid Fibril Formation
BIO0532 : Vazquez2014 - Chemical inhibition from amyloid protein aggregation kinetics
- BIOMD0000000532: [JSim version not yet available]
BIO0533 : Steckmann2012 - Amyloid beta-protein fibrillogenesis (kinetics of secondary structure conversion)
BIO0534 : Dwivedi2014 - Healthy Volunteer IL6 Model
BIO0535 : Dwivedi2014 - Crohns IL6 Disease model - Anti-IL6 Antibody
BIO0536 : Dwivedi2014 - Crohns IL6 Disease model - sgp130 activity
BIO0537 : Dwivedi2014 - Crohns IL6 Disease model - Anti-IL6R Antibody
BIO0538 : Clarke2000 - One-hit model of cell death in neuronal degenerations
- BIOMD0000000538: [JSim version not yet available]
BIO0539 : François2005 - Mixed Feedback Loop (two-gene network) metaid=COPASI0 timeUnits=time lengthUnits=length extentUnits=substance substanceUnits=substance volumeUnits=volume
BIO0540 : Yugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 1