JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 601 - 620 of 710
BIO0601 : Rosas2015 - Caffeine-induced luminal SR calcium changes
- BIOMD0000000601: [JSim version not yet available]
BIO0602 : Stavrum2013 - Tryptophan Metabolism in Liver
BIO0603 : PetelenzKuehn osmoadaptation WT
BIO0604 : PetelenzKuehn osmoadaptation pfk2627D
BIO0605 : PetelenzKuehn osmoadaptation HOG1att
BIO0606 : PetelenzKuehn osmoadaptation hog1D
BIO0607 : PetelenzKuehn osmoadaptation fps1D1
- BIOMD0000000607: [JSim version not yet available]
BIO0608 : Palsson2013 - Fully-integrated immune response model (FIRM)
BIO0609 : Reddyhoff2015 - Acetaminophen metabolism and toxicity
BIO0610 : PetelenzKuehn osmoadaptation gpd1D
- BIOMD0000000610: [JSim version not yet available]
BIO0611 : Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers
BIO0612 : Proctor2016 - Circadian rhythm of PTH and the dynamics of signaling molecules on bone remodeling
BIO0613 : Peterson2010 - Integrated calcium homeostasis and bone remodelling
- BIOMD0000000613: [JSim version not yet available]
BIO0614 : Kamihira2000
BIO0615 : Kuznetsov2016(II) - α-syn aggregation kinetics in Parkinson's Disease volumeUnits=volume id=MODEL1608150000 lengthUnits=length timeUnits=time
BIO0616 : Dunster2014 - WBC Interactions (Model1) substanceUnits=substance timeUnits=time volumeUnits=volume
BIO0617 : Walsh2014 - Inhibition kinetics of DAPT on APP Cleavage volumeUnits=volume id=MODEL1609120000 lengthUnits=length timeUnits=time
- BIOMD0000000617: [JSim version not yet available]
BIO0618 : Krohn2011 - Cerebral amyloid-β proteostasis regulated by membrane transport protein ABCC1
- BIOMD0000000618: [JSim version not yet available]
BIO0619 : Sluka2016 - Acetaminophen PBPK sboTerm=SBO:0000167
BIO0620 : Palmer2014 - Effect of IL-1β-Blocking therapies in T2DM - Disease Condition
- BIOMD0000000620: [JSim version not yet available]