JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 621 - 640 of 710
BIO0621 : Palmer2014 - Effect of IL-1β-Blocking therapies in T2DM - Healthy Condition
- BIOMD0000000621: [JSim version not yet available]
BIO0622 : NguyenLK2011 - Ubiquitination dynamics in Ring1B/Bmi1 system
BIO0623 : Orton2009 - Modelling cancerous mutations in the EGFR/ERK pathway - EGF Model
BIO0624 : Sluka2016 - Acetaminophen metabolism
BIO0625 : Leber2016 - Expanded model of Tfh-Tfr differentiation - Helicobacter pylori infection
BIO0626 : Ray2013 - Meiotic initiation in S. cerevisiae
BIO0627 : Winter2017 - Brain Energy Metabolism with PPP
- BIOMD0000000627: [JSim version not yet available]
BIO0628 : Li2012 Calcium mediated synaptic plasticity
- BIOMD0000000628: [JSim version not yet available]
BIO0629 : Haffez2017 - RAR interaction with synthetic analogues
BIO0630 : Venkatraman2011 - PLS-UPA behaviour in the presence of substrate competition 1 1 1 1
BIO0631 : DeCaluwe2016 - Circadian Clock
BIO0632 : Kollarovic2016 - Cell fate decision at G1-S transition
- BIOMD0000000632: [JSim version not yet available]
BIO0633 : Bulik2016 - Regulation of hepatic glucose metabolism
BIO0634 : Proctor2013 - Effect of Aβ immunisation in Alzheimer's disease (stochastic version)
BIO0635 : Nair2015 - Interaction between neuromodulators via GPCRs - Effect on cAMP/PKA signaling (D1 Neuron)
- BIOMD0000000635: [JSim version not yet available]
BIO0636 : Nair2015 - Interaction between neuromodulators via GPCRs - Effect on cAMP/PKA signaling (D2 Neuron)
- BIOMD0000000636: [JSim version not yet available]
BIO0637 : Bush2016 - Simplified Carrousel model of GPCR
- BIOMD0000000637: [JSim version not yet available]
BIO0638 : Bush2016 - Extended Carrousel model of GPCR-RGS substanceUnits=substance timeUnits=time volumeUnits=volume
- BIOMD0000000638: [JSim version not yet available]
BIO0639 : Thiaville2016 - Wild type folate pathway model with proposed PanB reaction
BIO0640 : DallePezze2016 - Activation of AMPK and mTOR by amino acids