JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 661 - 680 of 710
BIO0666 : Pappalardo2016 - PI3K/AKT and MAPK Signaling Pathways in Melanoma Cancer
BIO0667 : Hornberg2005 - MAPKsignalling
BIO0668 : Zhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - basic PD model
BIO0669 : Zhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - mechanistic PD model
BIO0670 : Owen1998 - tumour growth model
BIO0671 : Murphy2016 - Differences in predictions of ODE models of tumor growth
BIO0672 : Brown1997 - Plasma Melatonin Levels
BIO0673 : Lockwood2006 - Alzheimer's Disease PBPK model
- BIOMD0000000673: [JSim version not yet available]
BIO0674 : Reyes-Palomares2012 - a combined model hepatic polyamine and sulfur aminoacid metabolism - version1
BIO0676 : Chen2006 - Nitric Oxide Release from Endothelial Cells
BIO0677 : Holmes2006 - Hill's model of muscle contraction
BIO0678 : Tomida2003 - Calcium Oscillatory-induced translocation of nuclear factor of activated T cells
BIO0680 : Waugh2006 - Diabetic Wound Healing - TGF-B Dynamics
BIO0681 : Waugh2006 - Diabetic Wound Healing - Treated and Untreated Macrophage Dynamics
BIO0682 : Wierschem2004 - Electrical bursting activity in Pancreatic Islets
BIO0684 : Wodarz2003 Immunological Memory
BIO0685 : Wodarz2003 - Cytotoxic T lymphocyte cross-priming
BIO0686 : Wodarz2007 - Basic Model of Cytomegalovirus Infection
BIO0687 : Wodarz2007 - Cytomegalovirus infection model with cytotoxic T lymphocyte response
BIO0688 : Wodarz2007 - Cytomegalovirus infection model with cytotoxic T lymphocyte and natural killer cell response