JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 441 - 460 of 486
CML0447 : Signal processing in the TGF-beta superfamily ligand-receptor network
- vilar_2006:
- vilar_2006: [View MML]
- vilar_rnx_2006: [View MML]
CML0448 : Mechanisms of noise-resistance in genetic oscillators
- vilar_kueh_barkai_leibler_2002:
- vilar_kueh_barkai_leibler_2002: [View MML]
CML0449 : Dynamics of Muscle Glycogenolysis Modeled with pH Time Course Computation and pH-Dependent Reaction Equilibria and Enzyme Kinetics
- vinnakota_kemp_kushmerick_2006:
- vinnakota_kemp_kushmeric_2006_exp29frA02: [View MML]
- vinnakota_kemp_kushmeric_2006_exp29frA40: [View MML]
- vinnakota_kemp_kushmeric_2006_exp45: [View MML]
CML0450 : Common Phenotype of Resting Mouse EDL and SOL Muscles: EDL
- vinnakota_rusk_palmer_shankland_kushmerick_2010:
- vinnakota_rusk_palmer_shankland_kushmeric_2010_edl: [View MML]
- vinnakota_rusk_palmer_shankland_kushmeric_2010_soleus: [View MML]
CML0451 : Effects of IKr and IKs heterogeneity on action potential duration and its rate dependence: a simulation study (Midmyocardial Cell Model)
- viswanathan_shaw_rudy_1999:
- viswanathan_shaw_rudy_1999_a: [View MML]
- viswanathan_shaw_rudy_1999_b: [View MML]
- viswanathan_shaw_rudy_1999_c: [View MML]
CML0452 : Insulin receptor binding kinetics: modeling and simulation studies
- wanant_quon_2000:
- wanant_quon_2000_a: [View MML]
- wanant_quon_2000_b: [View MML]
CML0453 : PI3K-dependent cross-talk interactions converge with Ras as quantifiable inputs integrated by Erk
- wang_cirit_haugh_2009:
- wang_2009: [View MML]
CML0454 : A quantitative kinetic model for ATP-induced intracellular Ca2+ oscillations
- wang_huang_huang_2006:
- wang_2006: [View MML]
CML0455 : Mathematical modeling and qualitative analysis of insulin therapies
- wang_li_kuang_2007:
- wang_li_kuang_2007: [View MML]
CML0456 : Effect of riluzole on action potential in cultured human skeletal muscle cells
- wang_lin_lin_wu_2008:
- wang_lin_lin_wu_2008: [View MML]
CML0457 : Mathematical model of the neonatal mouse ventricular action potential
- wang_sobie_2008:
- wang_sobie_2008: [View MML]
CML0458 : Modeling of simulation-secretion coupling in a chromaffin cell
- warashina_ogura_2004:
- warashina_ogura_2004: [View MML]
CML0459 : Mathematical modelling of calcium wave propagation in mammalian airway epithelium: evidence for regenerative ATP release
- warren_tawhai_crampin_2009:
- warren_2010: [View MML]
CML0460 : Macrophage Dynamics in Diabetic Wound Healing
- waugh_sherratt_2006:
- waugh_sherratt_2006_a: [View MML]
- waugh_sherratt_2006_b: [View MML]
- waugh_sherratt_2006_c: [View MML]
CML0461 : Modeling the effects of treating diabetic wounds with engineered skin substitutes
- waugh_sherratt_2007:
- waugh_sherratt_2007_a: [View MML]
- waugh_sherratt_2007_b: [View MML]
- waugh_sherratt_2007_c: [View MML]
- waugh_sherratt_2007_d: [View MML]
CML0462 : Cells behaving badly: a theoretical model for the Fas/FasL system in tumour immunology
- webb_sherratt_fish_2002:
- webb_sherratt_fish_2002: [View MML]
CML0463 : Mathematical analysis of antiretroviral therapy aimed at HIV-1 eradication or maintenance of low viral loads
- wein_damato_perelson_1998:
- wein_1998: [View MML]
CML0464 :
- weinstein_1995:
- Weinstein_1995_NHE3: [View MML]
- Weinstein_1995_NHE3_Fig2: [View MML]
- Weinstein_1995_NHE3_Fig3: [View MML]
- Weinstein_1995_NHE3_Fig3b: [View MML]
- Weinstein_1995_NHE3_Fig4: [View MML]
- Weinstein_1995_NHE3_Fig4b: [View MML]
- Weinstein_1995_NHE3_Fig5: [View MML]
CML0465 : A mathematical model of the inner medullary collecting duct of the rat: acid/base transport
- weinstein_1998:
- weinstein_1998_variant01: [View MML]
- weinstein_1998_variant02: [View MML]
CML0466 : A mathematical model of the outer medullary collecting duct of the rat
- weinstein_2000:
- Weinstein_2000_AE1: [View MML]