JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 381 - 400 of 486
CML0386 : Quantitative Reconstruction of Cardiac Electromechanics in Human Myocardium: Regional Heterogeneity
- seemann_sachse_weib_dossel_2003:
- seemann_sachse_weib_dossel_2003: [View MML]File: seemann_sachse_weib_dossel_2003.mod does Not exist!
CML0387 : A Mathematical Treatment of Integrated Ca Dynamics within the Ventricular Myocyte
- shannon_wang_puglisi_weber_bers_2004:
- shannon_wang_puglisi_weber_bers_2004_a: [View MML]
- shannon_wang_puglisi_weber_bers_2004_b: [View MML]
CML0388 : Modeling the Cardiovascular System
- shaw_chase_starfinger_smith_hann_desaive_ghuysen_2007:
- shaw_chase_starfinger_smith_hann_desaive_ghuysen_2007: [View MML]
CML0389 : Electrophysiological effects of acute myocardial ischemia: a theoretical study of altered cell excitability and action potential duration
- shaw_rudy_1997:
- shaw_rudy_1997: [View MML]
CML0390 : Model of Intracellular Calcium Cycling in Ventricular Myocytes
- shiferaw_watanabe_garfinkel_weiss_karma_2003:
- shiferaw_watanabe_garfinkel_weiss_karma_2003: [View MML]
CML0391 :
- shi_hose_2009:
- EAtrium: [View MML]File: EAtrium.mod does Not exist!
- EVentricle: [View MML]File: EVentricle.mod does Not exist!
- ModelHeart: [View MML]File: ModelHeart.mod does Not exist!
- ModelMain: [View MML]File: ModelMain.mod does Not exist!
- ModelPul: [View MML]File: ModelPul.mod does Not exist!
- ModelSys: [View MML]File: ModelSys.mod does Not exist!
- ParaHeart: [View MML]
- ParaPul: [View MML]
- ParaSys: [View MML]
- TempCDa: [View MML]File: TempCDa.mod does Not exist!
- TempCDv: [View MML]File: TempCDv.mod does Not exist!
- TempR: [View MML]File: TempR.mod does Not exist!
- TempRC: [View MML]File: TempRC.mod does Not exist!
- TempRLC: [View MML]File: TempRLC.mod does Not exist!
- TestCDv3: [View MML]File: TestCDv3.mod does Not exist!
- Units: [View MML]
CML0392 :
- shim_leem_abe_noma_2006:
- shim_leem_abe_noma_2006: [View MML]
CML0393 : A mathematical model of fatigue in skeletal muscle force contraction
- shorten_ocallaghan_davidson_soboleva_2007:
- shorten_ocallaghan_davidson_soboleva_2007: [View MML]
- shorten_ocallaghan_davidson_soboleva_2007_variant01: [View MML]
CML0394 : CRH-induced Electrical Activity and Calcium Signalling in Pituitary Corticotrophs
- shorten_robson_mckinnon_wall_2000:
- shorten_robson_mckinnon_wall_2000: [View MML]
CML0395 : A Hodgkin-Huxley Model Exhibiting Bursting Oscillations
- shorten_wall_2000:
- shorten_wall_2000: [View MML]
CML0396 : A mathematical model of parathyroid hormone response to acute changes in plasma ionized calcium concentration in humans
- shrestha_hollot_chipkin_schmitt_chait_2010:
- shrestha_2010: [View MML]
CML0397 : Nonlinearities make a difference: comparison of two common Hill-type models with real muscle
- siebert_rode_herzog_till_blickhan_2008:
- siebert_CC_2008: [View MML]
- siebert_CC_SEC_2008: [View MML]
CML0398 : Anode/cathode make and break phenomena in a model of defibrillation
- skouibine_trayanova_moore_1999:
- skouibine_trayanova_moore_1999: [View MML]
CML0399 : Hypothalamic regulation of pituitary secretion of luteinizing hormone. II. Feedback control of gonadotropin secretion
- smith_1980:
- smith_1980: [View MML]
CML0400 :
- smith_abdala_koizumi_rybak_paton_2007:
- smith_2007_aug_E: [View MML]
- smith_2007_early_I: [View MML]
- smith_2007_post_I: [View MML]
- smith_2007_pre_I: [View MML]
- smith_2007_synaptic_coupling: [View MML]File: smith_2007_synaptic_coupling.mod does Not exist!
CML0401 : Minimal haemodynamic system model including ventricular interaction and valve dynamics.
- smith_chase_nokes_shaw_wake_2004:
- smith_chase_nokes_shaw_wake_2004: [View MML]
CML0402 : Development of models of active ion transport for whole-cell modelling: cardiac sodium-potassium pump as a case study
- smith_crampin_2004:
- smith_crampin_2004: [View MML]
CML0403 : A dynamic model of the type-2 inositol triphosphate receptor
- sneyd_dufour_2002:
- sneyd_dufour_2002: [View MML]
CML0404 : A Model of Calcium Waves in Pancreatic and Parotid Acinar Cells
- sneyd_tsanevaatanasova_bruce_straub_giovannucci_yule_2003:
- sneyd_tsanevaatanasova_bruce_straub_giovannucci_yule_2003: [View MML]File: sneyd_tsanevaatanasova_bruce_straub_giovannucci_yule_2003.mod does Not exist!
CML0406 : Intercellular calcium waves mediated by diffusion of inositol trisphosphate: a two-dimensional model
- sneyd_wetton_charles_sanderson_1995:
- sneyd_1995: [View MML]