JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 341 - 360 of 486
CML0346 : Dynamics of the Cell Cycle: Checkpoints, Sizers, and Timers
- qu_maclellan_weiss_2003:
- qu_maclellan_weiss_2003: [View MML]
CML0347 : Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
- ralser_wamelink_kowald_gerisch_heeren_struys_klipp_jakobs_breitenbach_lehrach_kr:
- ralser_2007: [View MML]
CML0348 : Mathematical analysis of canine atrial action potentials: rate, regional factors, and electrical remodeling
- ramirez_nattel_courtemanche_2000:
- ramirez_nattel_courtemanche_2000: [View MML]
CML0349 : Survival and apoptotic pathways initiated by TNF-alpha: modeling and predictions
- rangamani_2007:
- rangamani_2007: [View MML]
CML0350 : A minimal mathematical model of calcium homeostasis
- raposo_sobrinho_ferreira_2002:
- raposo_2002: [View MML]
CML0351 : Modeling of bone formation and resorption mediated by parathyroid hormone: response to estrogen/PTH therapy
- rattananakul_lenbury_krishnamara_wollkind_2003:
- rattananakul_lenbury_krishnamara_wollkind_2003_a: [View MML]
- rattananakul_lenbury_krishnamara_wollkind_2003_b: [View MML]
- rattananakul_lenbury_krishnamara_wollkind_2003_c: [View MML]
CML0352 : Stiffness-distortion sacromere model for muscle stimulation
- razumova_bukatina_campbell_1999:
- razumova_bukatina_campbell_1999: [View MML]
CML0353 : Different Myofilament Nearest-Neighbor Interactions Have Distinctive Effects on Contractile Behavior
- razumova_bukatina_campbell_2000:
- razumova_bukatina_campbell_2000: [View MML]
CML0354 : A mathematical model of the methionine cycle
- reed_nijhout_sparks_ulrich_2004:
- reed_nijhout_sparks_ulrich_2004: [View MML]
CML0355 : Model of Calcium Oscillations Due to Negative Feedback in Olfactory Cilia
- reidl_borowski_sensse_starke_zapotocky_eiswirth_2006:
- reidl_borowski_sensse_starke_zapotocky_eiswirth_2006: [View MML]
CML0356 : Fighting a virus with a virus: a dynamic model for HIV-1 therapy
- revilla_garcia-ramos_2003:
- revilla_garcia-ramos_2003: [View MML]
CML0357 : Modeling Activation and Desensitisation of G-Protein Coupled Receptors Provides Insight into Ligand Efficacy
- riccobene_omann_linderman_1999:
- riccobene_omann_linderman_1999: [View MML]
CML0358 : Modeling short-term interval-force relations in cardiac muscle
- rice_jafri_winslow_2000:
- rice_jafri_winslow_2000: [View MML]
CML0359 : Approximate model of cooperative activation and crossbridge cycling in cardiac muscle using ordinary differential equations
- rice_wang_bers_detombe_2008:
- rice_wang_bers_detombe_2008: [View MML]
CML0360 : Comparison of putative cooperative mechanisms in cardiac muscle: length dependence and dynamic responses (model 1)
- rice_winslow_hunter_1999:
- rice_winslow_hunter_1999_a: [View MML]
- rice_winslow_hunter_1999_b: [View MML]
- rice_winslow_hunter_1999_c: [View MML]
- rice_winslow_hunter_1999_d: [View MML]
- rice_winslow_hunter_1999_e: [View MML]
CML0361 : Modeling Gain and Gradedness of Ca2+ Release in the Functional Unit of the Cardiac Diadic Space
- rice_winslow_jafri_1999:
- rice_winslow_jafri_1999: [View MML]File: rice_winslow_jafri_1999.mod does Not exist!
CML0362 : Stretch-induced changes in arrhythmogenesis and excitability in experimentally based heart cell models
- riemer_sobie_tung_1998:
- riemer_sobie_tung_1998: [View MML]
CML0363 : Large Elastic Deformations of Isotropic Materials. VII. Experiments on the Deformation of Rubber
- rivlin_saunders_1951:
- rivlin_saunders_1951: [View MML]
CML0364 : A collocation--Galerkin finite element model of cardiac action potential propagation
- rogers_mcculloch_1994:
- rogers_mcculloch_1994: [View MML]
CML0365 : Alternating Oscillations and Chaos in a Model of Two Coupled Biochemical Oscillators Driving Successive Phases of the Cell Cycle
- romond_rustici_gonze_goldbeter_1999:
- romond_rustici_gonze_goldbeter_1999: [View MML]