JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 301 - 320 of 486
CML0306 : Remodelling of Calcium Dynamics in Guinea-Pig Ventricular Cells
- noble_noble_2001:
- noble_noble_2001: [View MML]
CML0307 : The Role of Sodium-Calcium Exchange During the Cardiac Action Potential
- noble_noble_bett_earm_ho_so_1991:
- noble_noble_bett_earm_ho_so_1991: [View MML]
CML0308 : Improved guinea-pig ventricular cell model incorporating a diadic space, IKr and IKs, and length- and tension-dependent processes.
- noble_varghese_kohl_noble_1998:
- noble_varghese_kohl_noble_1998_a: [View MML]
- noble_varghese_kohl_noble_1998_b: [View MML]
- noble_varghese_kohl_noble_1998_c: [View MML]
CML0309 : Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions
- novak_csikasznagy_gyorffy_chen_tyson_1998:
- novak_csikasznagy_gyorffy_chen_tyson_1998: [View MML]
CML0310 : Mathematical model of the cell division cycle of fission yeast
- novak_pataki_ciliberto_tyson_2001:
- novak_pataki_ciliberto_tyson_2001: [View MML]
CML0311 : Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.
- novak_tyson_1993:
- novak_tyson_1993_a: [View MML]
- novak_tyson_1993_b: [View MML]
CML0312 : Modeling the control of DNA replication in fission yeast
- novak_tyson_1997:
- novak_tyson_1997: [View MML]
CML0313 : A model for restriction point control of the mammalian cell cycle
- novak_tyson_2004:
- novak_tyson_2004: [View MML]
CML0314 : Population dynamics of immune responses to persistent viruses
- nowak_bangham_1996:
- nowak_bangham_1996: [View MML]
- nowak_bangham_1996b: [View MML]
CML0315 : Mathematical Model of an Adult Human Atrial Cell: The Role of K+ Currents in Repolarization
- nygren_fiset_firek_clark_lindblad_clark_giles_1998:
- nygren_fiset_firek_clark_lindblad_clark_giles_1998: [View MML]
CML0316 : A model of cell cycle behavior dominated by kinetics of a pathway stimulated by growth factors
- obeyesekere_zimmerman_tecarro_auchmuty_1999:
- obeyesekere_zimmerman_tecarro_auchmuty_1999: [View MML]
CML0317 : Mechanism of protection of peroxidase activity by oscillatory dynamics
- olsen_hauser_kummer_2003:
- olsen_hauser_kummer_2003: [View MML]
CML0318 : Finite element modelling of contracting skeletal muscle
- oomens_maenhout_vanoijen_drost_baaijens_2003:
- oomens_maenhout_vanoijen_drost_baaijens_2003: [View MML]File: oomens_maenhout_vanoijen_drost_baaijens_2003.mod does Not exist!
CML0319 : Astrocytic processes explaining neural-activity-induced shrinkage of extraneuronal space
- ostby_oyehaug_einevoll_nagelhus_plahte_zeuthen_voipio_lloyd_ottersen_omholt_2008:
- ostby_oyehaug_einevoll_nagelhus_plahte_zeuthen_voipio_lloyd_otte: [View MML]File: ostby_oyehaug_einevoll_nagelhus_plahte_zeuthen_voipio_lloyd_ottersen_omholt_2008.mod does Not exist!
CML0320 : PKPD model of interleukin-21 effects on thermoregulation in monkeys--application and evaluation of stochastic differential equations
- overgaard_2007:
- overgaard_baseline_2007: [View MML]
- overgaard_pharmacodynamic_2007: [View MML]
CML0321 : Dependence of spontaneous neuronal firing and depolarization block on astroglial membrane processes: Fig 2B
- oyehaug_ostby_lloyd_omholt_einevoll_2011:
- oyehaug_2009_version1: [View MML]
- oyehaug_2009_version2: [View MML]
CML0322 : Dependence of spontaneous neuronal firing and depolarization block on astroglial membrane processes: Fig 2A
- oyehaug_ostby_lloyd_ottersen_omholt_einevoll_2009:
- oyehaug_2009_version1: [View MML]
- oyehaug_2009_version2: [View MML]
CML0323 : Kinetic Model for Integrin-mediated Adhesion Release During Cell Migration
- palecek_horwitz_lauffenburger_1999:
- palecek_horwitz_lauffenburger_1999: [View MML]File: palecek_horwitz_lauffenburger_1999.mod does Not exist!
CML0324 : A Mathematical Model of Action Potential Heterogeneity in Adult Rat Left Ventricular Myocytes
- pandit_clark_giles_demir_2001:
- pandit_clark_giles_demir_2001_endocardial_cell: [View MML]
- pandit_clark_giles_demir_2001_epicardial_cell: [View MML]
- pandit_clark_giles_demir_2001_mouse_ventricle: [View MML]
- pandit_clark_giles_demir_2001_rat_ventricle: [View MML]
CML0325 : A Mathematical Model of the Electrophysiological Alterations in Rat Ventricular Myocytes in Type-I Diabetes
- pandit_giles_demir_2003:
- pandit_giles_demir_2003: [View MML]