JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 121 - 140 of 486
CML0123 : Impulses and Physiological States in Theoretical Models of Nerve Membrane
- fitzhugh_1961:
- fitzhugh_1961: [View MML]
CML0124 : A Model-Based Approach for the Optimization of Radioimmunotherapy through Antibody Design and Radionuclide Selection
- flynn_green_pedley_boxer_dearling_watson_boden_begent_2002:
- flynn_green_pedley_boxer_dearling_watson_boden_begent_2002: [View MML]File: flynn_green_pedley_boxer_dearling_watson_boden_begent_2002.mod does Not exist!
CML0125 : Impulse Encoding Mechanisms of Ganglion Cells in the Tiger Salamander Retina
- fohlmeister_miller_1997:
- fohlmeister_miller_1997: [View MML]
CML0126 : Ionic mechanism of electrical alternans
- fox_mcharg_gilmour_2002:
- fox_mcharg_gilmour_2002: [View MML]
CML0127 : Modeling of Ca2+ flux in pancreatic beta-cells: role of the plasma membrane and intracellular stores
- fridlyand_tamarina_philipson_2003:
- fridlyand_tamarina_philipson_2003: [View MML]
CML0128 :
- friel_1995:
- friel_1995: [View MML]
CML0129 : Decoupling of receptor and downstream signals in the Akt pathway by its low-pass filter characteristics
- fujita_toyoshima_uda_ozaki_kubota_kuroda_2010:
- fujita_2010_EGFR_inhibited_Akt: [View MML]
- fujita_2010_EGF_dependent_Akt: [View MML]
- fujita_2010_NGF_dependent_Akt: [View MML]
CML0130 : Effect of Na/Ca Exchange on Plateau Fraction and [Ca]i in Models for Bursting in Pancreatic Beta-Cells
- gall_susa_1999:
- gall_susa_1999_a: [View MML]
- gall_susa_1999_b: [View MML]
- gall_susa_1999_c: [View MML]
CML0131 : A theory for controlling cell cycle dynamics using a reversibly binding inhibitor
- gardner_dolnik_collins_1998:
- gardner_dolnik_collins_1998: [View MML]
CML0132 :
- garmendia-torres_goldbeter_jacquet_2007:
- garmendiatorres_2007: [View MML]
- garmendiatorres_2007_1.1model: [View file]File: garmendiatorres_2007_1.1model.mod does Not exist!
- Msn2_fractions: [View MML]
- nucleocytoplasm: [View MML]
- process_fractions: [View MML]
- subunits: [View MML]
- V_rates: [View MML]
CML0133 : One-dimensional Rabbit Sinoatrial Node Models: Benefits and Limitations
- garny_kohl_hunter_boyett_noble_2003:
- garny_kohl_hunter_boyett_noble_2003: [View MML]
CML0134 : Hyperelastic modelling of arterial layers with distributed collagen fibre orientations
- gasser_ogden_holzapfel_2006:
- gasser_ogden_holzapfel_2006_a: [View MML]
- gasser_ogden_holzapfel_2006_b: [View MML]
CML0135 : Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle
- gerard_goldbeter_2009:
- gerard_2009: [View MML]
CML0136 : A Case Study in Model-driven Synthetic Biology
- gilbert_heiner_rosser_fulton_gu_trybilo_2007:
- gilbert_heiner_rosser_fulton_gu_trybilo_2007: [View MML]
CML0137 : Calcium-activated K+ Channels of Mouse Beta Cells are Controlled by Both Store and Cytoplasmic Ca2+: Experimental and Theoretical Studies
- goforth_bertram_khan_zhang_sherman_satin_2002:
- goforth_bertram_khan_zhang_sherman_satin_2002: [View MML]
CML0138 :
- goldbeter_1991:
- goldbeter_1991: [View MML]
- goldbeter_1991_1.1: [View file]
- goldbeter_1991_constitutive_law1: [View MML]File: goldbeter_1991_constitutive_law1.mod does Not exist!
- goldbeter_1991_constitutive_law2: [View MML]File: goldbeter_1991_constitutive_law2.mod does Not exist!
- goldbeter_1991_units: [View MML]
- goldbeter_annotated_1991: [View MML]
CML0139 :
- goldbeter_1995:
- goldbeter_1995: [View MML]
- goldbeter_1995_1.1: [View file]
- goldbeter_1995_units: [View MML]
CML0140 :
- goldbeter_2006:
- goldbeter_2006: [View MML]
- goldbeter_2006_1.1: [View file]
- goldbeter_2006_law1: [View MML]File: goldbeter_2006_law1.mod does Not exist!
- goldbeter_2006_units: [View MML]
CML0141 :
- goldbeter_dupont_berridge_1990:
- goldbeter_1990_1.1: [View file]
- goldbeter_1990_units: [View MML]
- goldbeter_dupont_berridge_1990: [View MML]
CML0142 :
- goldbeter_gonze_pourquie_2007:
- goldbeter_2007: [View MML]
- goldbeter_2007_1.1: [View file]
- goldbeter_2007_law1: [View MML]File: goldbeter_2007_law1.mod does Not exist!
- goldbeter_2007_units: [View MML]