JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 181 - 200 of 486
CML0183 : Computational modeling of cardiovascular response to orthostatic stress
- heldt_2002:
- circ_pbpk: [View MML]
- heart: [View MML]
- lpc: [View MML]
CML0184 : Viral Dynamics in vivo: Limitations on estimates of intracellular delay and virus decay
- herz_bonhoeffer_anderson_may_nowak_1996:
- herz_bonhoeffer_anderson_may_nowak_1996: [View MML]
CML0185 : A mathematical model for elongation of a peptide chain
- heyd_drew_2003:
- heyd_drew_2003: [View MML]
CML0186 : Excitation-contraction coupling and extracellular calcium transients in rabbit atrium: reconstruction of basic cellular mechanisms
- hilgemann_noble_1987:
- hilgemann_noble_1987: [View MML]
CML0187 : A Simplified Local Control Model of Calcium-Induced Calcium Release in Cardiac Ventricular Myocytes
- hinch_greenstein_tanskanen_xu_winslow_2004:
- hinch_greenstein_tanskanen_xu_winslow_2004: [View MML]
CML0188 : A quantitative description of membrane current and its application to conductance and excitation in nerve
- hodgkin_huxley_1952:
- hodgkin_huxley_1952: [View MML]
- hodgkin_huxley_1952_variant01: [View MML]
CML0189 : Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis
- hoefnagel_starrenburg_martens_hugenholtz_kleerebezem_vanswam_bongers_westerhoff_:
- hoefnagel_starrenburg_martens_hugenholtz_kleerebezem_vanswam_bon: [View MML]
CML0191 : Control of MAPK signalling: from complexity to what really matters
- hornberg_binder_bruggeman_schoeberl_heinrich_westerhoff_2005:
- hornberg_binder_bruggeman_schoeberl_heinrich_westerhoff_2005: [View MML]
CML0192 :
- houart_dupont_goldbeter_1999:
- constitutive_law1: [View MML]
- constitutive_law2: [View MML]
- houart_1999: [View MML]
- houart_1999_1.0: [View file]
- houart_1999_1.1: [View file]
CML0193 : Ultrasensitivity in the mitogen-activated protein kinase cascade
- huang_ferrell_1996:
- huang_ferrell_1996: [View MML]
CML0194 : Rate dependence and regulation of action potential and calcium transient in a canine cardiac ventricular cell model
- hund_rudy_2004:
- hund_rudy_2004_a: [View MML]
- hund_rudy_2004_b: [View MML]
CML0195 : Modelling the mechanical properties of cardiac muscle
- hunter_mcculloch_terkeurs_1998:
- hunter_mcculloch_terkeurs_1998: [View MML]
CML0196 : Analytical models of propagation in excitable cells
- hunter_mcnaughton_noble_1975:
- hunter_mcnaughton_noble_1975: [View MML]
CML0197 : A pole-zero constitutive law for myocardium
- hunter_smaill_hunter_1995:
- hunter_smaill_hunter_1995: [View MML]
CML0198 : Full-scale model of glycolysis in Saccharomyces cerevisiae
- hynne_dano_sorensen_2001:
- hynne_dano_sorensen_2001: [View MML]
CML0199 : Compartmentation of cAMP signaling in cardiac myocytes: a computational study
- iancu_2007:
- iancu_jones_harvey_2007: [View MML]
CML0200 : A Mathematical Model for Germinal Centre Kinetics and Affinity Maturation
- iber_maini_2002:
- iber_maini_2002: [View MML]
CML0201 : One-dimensional mathematical model of the atrioventricular node including atrio-nodal, nodal, and nodal-his cells
- inada_2009:
- inada_AN_2009: [View MML]
- inada_NH_2009: [View MML]
- inada_N_2009: [View MML]
CML0202 : International SI Units, 2006
- international_si_units_2006:
- international_si_units_2006: [View MML]
CML0203 : Modulatory effect of calmodulin-dependent kinase II (CaMKII) on sarcoplasmic reticulum Ca2+ handling and interval-force relations: a modelling study.
- iribe_kohl_noble_2006:
- iribe_kohl_noble_2006: [View MML]