ErdemirA 16:19, 27 July 2010 (EDT) I've received an e-mail from http://www.webmedcentral.com. It appears that they are trying a new model: free and open publishing immediately followed by author solicited open review process (see http://www.webmedcentral.com/about_us/Our_Peer_Review_Policy).
ROOTS is a package designed to take experimentally determined morphometric data and return an artificial neuronal arbor which satisfies the user-defined parameters.
Originally this package was written to aid the construction of biologically realistic neural models for use in computational studies of extracellular electrical stimulation but it can be used for diverse neural modeling problems.
This resource was validated using a quantitative and qualitative analysis of the generative algorithms, and using a comparison of generated fibers with those observed in histological studies.
More details are available in the publication:
https://www.frontiersin.org/articles/10.3389/fncom.2020.00013/full#S10
ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling
Clayton S. Bingham, Adam Mergenthal, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi and Theodore W. Berger
Front. Comput. Neurosci., 21 February 2020
Modeling Need
Method/Type
Software
Issues
ErdemirA 16:55, 8 February 2010 (EST)
I may be repeating what all of you may have talked about before but it seems like we should continue this discussion.
04Aug08: Steve Stevenson (steve@cs.clemson.edu)
A Tan Paper on Standards and Sharing [A “tan” paper is a not-so-clean white paper :-)]
Analysis It seems to me that these two issues need to be de-convolved.
Standards are useful when ideas on not changing rapidly – the standards process is 'way too slow to react to the research environment. From the supercomputing side, here's two examples:
The OpenSim project and the National Center for Simulation in Rehabilitation Research (NCSRR) at Stanford invite you to join our next webinar, featuring Christopher Dembia from Stanford University.
DETAILS
Title: Automating OpenSim Workflows: An Intro to the OpenSim API in Matlab
Speaker: Christopher Dembia, Stanford University
Time: Tuesday, July 7, 2020 10:00 a.m. Pacific Time
